eBioX pipeline

eBioX specifications


Unique identifier OMICS_08913
Name eBioX
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS
License GNU General Public License version 2.0
Computer skills Medium
Stability No
Maintained No


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Publication for eBioX

eBioX IN pipelines

PMCID: 3826655
PMID: 24131955
DOI: 10.1038/ncomms3601

[…] were compared with the sequence of strain 630 (am180355) and the shotgun sequence of strain cd37 (ahjj01000000) using the artemis comparison tool25. snp analysis was performed by alignment using ebiox version 1.51. sequence of the chromosomal dna used to compare the donor- and recipient-specific dna in the transconjugants is provided in supplementary data 1. sequence at the junctions […]

PMCID: 3022682
PMID: 21172023
DOI: 10.1186/1743-422X-7-369

[…] http://www.hiv.lanl.gov/content/sequence/gene_cutter/cutter.html. hxb2 was included in each msa to identify the selected regions. msas were further edited manually using msa editors bioedit and ebiox, and analyzed in clc dna workbench http://www.clcbio.com (aarhus, denmark)., sequences from na├»ve isolates were retrieved from los alamos hiv databases. msas were generated as mentioned […]

eBioX institution(s)
The Linnaeus Centre for Bioinformatics, Uppsala University, Biomedical centre, Uppsala, Sweden

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