EBSeq-HMM statistics

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EBSeq-HMM specifications

Information


Unique identifier OMICS_07957
Name EBSeq-HMM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.14.0
Stability Stable
Requirements
EBSeq
Maintained Yes

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Maintainers


  • person_outline Christina Kendziorski <>
  • person_outline Ning Leng <>

Publication for EBSeq-HMM

EBSeq-HMM in pipeline

2017
PMCID: 5681548
PMID: 29127290
DOI: 10.1038/s41467-017-01425-3

[…] levels were estimated using feature counts (version 1.5.0) with parameters “-t 7 --primary”, gene-level raw counts were derived from the sum of the corresponding values for all isoforms of a gene., ebseq-hmm18 were used to analyze the differences in gene expression among three stages of monocyte and granulocyte differentiation, respectively. there are two main steps for ebseq-hmm to get […]


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EBSeq-HMM in publication

PMCID: 5681548
PMID: 29127290
DOI: 10.1038/s41467-017-01425-3

[…] good reproducibility (supplementary fig. ).fig. 1 , to investigate the rbp expression patterns, we first performed a differential expression (de) analysis of ensembl-annotated human genes by ebseq-hmm (supplementary data ). combined with rbpdb- and atrract-annotated, human rbp genes, the de analysis revealed 1,100 (from batch 1) and 1,188 (from batch 2) monotonically up-regulated […]


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EBSeq-HMM institution(s)
Department of Statistics, University of Wisconsin, Madison, WI, USA; Regenerative Biology, Morgridge Institute for Research, Madison, WI, USA; Department of Cell and Regenerative Biology, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA
EBSeq-HMM funding source(s)
Supported by NIH GM102756, NIH U54 AI117924, NSF DMS-12-65203, and UL1 RR025011.

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