EC2KEGG statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Metabolic pathway comparison chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

EC2KEGG specifications

Information


Unique identifier OMICS_05782
Name EC2KEGG
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Aleksey Porollo <>

Publication for EC2KEGG

EC2KEGG in publications

 (3)
PMCID: 5800598
PMID: 29408883
DOI: 10.1371/journal.pone.0192379

[…] njay protein sequences were annotated using blast2go [], from which enzyme commission (ec) numbers were extracted and compared in pairwise fashion with each of ay-wb and oy-m using the ec2kegg program []. the prodigal gene finder was then run independently on ay-wb and oy-m, and resultant protein sequences were assigned ec numbers using blast2go. the species-specific ec lists […]

PMCID: 5322231
PMID: 28280499
DOI: 10.3389/fpls.2017.00213

[…] was estimated using the r package q-value v1.0 (storey, )., functional annotation was carried out using blast2go 2.8.0 (conesa et al., ). statistical analysis of kegg pathways was carried out using ec2kegg (porollo, ) and full results are shown in table ., mapman analysis was carried out using mapman 3.5.1r2 (thimm et al., ) and mercator (lohse et al., )., next generation sequencing (ngs) runs […]

PMCID: 4222102
PMID: 25370490
DOI: 10.1128/mBio.01834-14

[…] enzyme-specific sequence profiles (). identified enzymes were mapped to metabolic pathways defined in the kegg pathway database () and compared with a reference genome, that of s. pombe, using the ec2kegg tool ()., rna was isolated from cryogenically preserved p. murina and p. carinii organisms with trizol reagent (life technologies, grand island, ny) according to the manufacturer’s protocol. […]


To access a full list of publications, you will need to upgrade to our premium service.

EC2KEGG institution(s)
Center for Autoimmune Genomics and Etiology, Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA

EC2KEGG reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review EC2KEGG