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eCAMBer specifications

Information


Unique identifier OMICS_08616
Name eCAMBer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 1.08
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Michal Wozniak

Publications for eCAMBer

eCAMBer citation

library_books

Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors

2017
Front Microbiol
PMCID: 5266723
PMID: 28184216
DOI: 10.3389/fmicb.2017.00048

[…] sequences were annotated using prokka v1.11 (seemann, )., manual curation of the annotation to remove false overlapping genes and correct translation initiation start sites was performed using ecamber (wozniak et al., ). genes encoding hypothetical proteins < 61 aa in length, with no similar proteins in the ncbi databases and lacking any detectable conserved domains, were omitted […]


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eCAMBer institution(s)
Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland; School of Computing, National University of Singapore, Singapore, Singapore
eCAMBer funding source(s)
This work is supported in part by Polish Ministry of Science and Higher Education grant no. 2012/05/ST6/03247 and Singapore Ministry of Education Tier-2 grant no. MOE2009-T2-2-004.

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