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|Restrictions to use||None|
|Database management system||MySQL|
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- Escherichia coli
Publication for EchoBASE
A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations
[…] ral properties (e.g., substrate specificities, complex partnerships or membrane topology). BuchneraBASE was also used to access the annotations of orthologous genes in Escherichia coli (notably from EchoBase and EcoCyc). […]
Economical Evolution: Microbes Reduce the Synthetic Cost of Extracellular Proteins
[…] The protein sequences and locations for E. coli K-12 were obtained from EchoBASE EchoLOCATION (http://www.york.ac.uk/res/thomas/index.cfm); YdbA (EB1284) lacked sequence data. The locations of FlgM () and FliK () were reassigned to extracellular proteins, and FlgJ was rea […]
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence
[…] The SgrR amino-acid sequence was retrieved from EchoBASE () and used as a query in a BlastP search against the non-redundant protein sequence databases at NCBI, UniProt database at EBI and the OMNIOME pep database at CMR. Additional BlastP searches […]
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