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EchoBASE specifications


Unique identifier OMICS_21025
Name EchoBASE
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes


  • Bacteria
    • Escherichia coli

Publication for EchoBASE

EchoBASE citations


A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations

PLoS One
PMCID: 3246468
PMID: 22229056
DOI: 10.1371/journal.pone.0029096

[…] ral properties (e.g., substrate specificities, complex partnerships or membrane topology). BuchneraBASE was also used to access the annotations of orthologous genes in Escherichia coli (notably from EchoBase and EcoCyc). […]


Economical Evolution: Microbes Reduce the Synthetic Cost of Extracellular Proteins

PMCID: 2932507
PMID: 20824102
DOI: 10.1128/mBio.00131-10

[…] The protein sequences and locations for E. coli K-12 were obtained from EchoBASE EchoLOCATION (; YdbA (EB1284) lacked sequence data. The locations of FlgM () and FliK () were reassigned to extracellular proteins, and FlgJ was rea […]


Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence

Nucleic Acids Res
PMCID: 2760817
PMID: 19531735
DOI: 10.1093/nar/gkp501

[…] The SgrR amino-acid sequence was retrieved from EchoBASE () and used as a query in a BlastP search against the non-redundant protein sequence databases at NCBI, UniProt database at EBI and the OMNIOME pep database at CMR. Additional BlastP searches […]


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EchoBASE institution(s)
Department of Biology, University of York, York, UK; Scientific Computing and Mathematical Modelling, GlaxoSmithKline, Stevenage, UK
EchoBASE funding source(s)
Supported by GlaxoSmithKline and the BBSRC.

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