ECLAT

[…] with a modified t-test, was used for the statistical testing and the thresholds for the up- and down-regulated genes were chosen individually for each comparison (table  , additional files and )., eclat classification of the lichen est sequences used for the microarray probe design was performed as previously described []. blastx [] was used to compare the lichen sequences to a non-redundant […]

[…] sequencing data., altogether 243,729 high quality sequence reads were de novo assembled into 16,204 contigs and 49,587 singletons. the genome of origin for the sequences produced was predicted using eclat with sequences derived from the axenically grown symbiotic partners used as training sequences for the classification model. 62.8% of the sequences were classified as being of fungal origin […]

[…] be produced and used, the éclair web server also provides pre-computed models for a series of the more common host:pathogen and host:host pairs that have been encountered within our research., the eclat solution () to the problem of differentiating species origin for ests sequenced from mixed libraries uses a support vector machine (svm) method for classification. the eclat svm is trained […]