ECLAT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ECLAT
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Protocols

ECLAT specifications

Information


Unique identifier OMICS_06112
Name ECLAT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainer


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Publication for ECLAT

ECLAT citations

 (3)
call_split

Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen

2013
BMC Genomics
PMCID: 3878897
PMID: 24325588
DOI: 10.1186/1471-2164-14-870
call_split See protocol

[…] ing with a modified t-test, was used for the statistical testing and the thresholds for the up- and down-regulated genes were chosen individually for each comparison (Table  , Additional files and ).Eclat classification of the lichen EST sequences used for the microarray probe design was performed as previously described []. BLASTX [] was used to compare the lichen sequences to a non-redundant (n […]

call_split

Characterization of a transcriptome from a non model organism, Cladonia rangiferina, the grey reindeer lichen, using high throughput next generation sequencing and EST sequence data

2012
BMC Genomics
PMCID: 3534622
PMID: 23110403
DOI: 10.1186/1471-2164-13-575
call_split See protocol

[…] the lengths of the biggest contigs until 50% of the total contig length was reached. The minimum contig length in this set is the number that was used to report the N50 value of the de novo assembly.Eclat [] was used to identify the genome of origin for the contigs and singletons derived from lichen tissue. The Sanger sequences obtained from the axenically grown algal and fungal symbiont cDNA lib […]

call_split

Éclair—a web service for unravelling species origin of sequences sampled from mixed host interfaces

2005
Nucleic Acids Res
PMCID: 1160195
PMID: 15980572
DOI: 10.1093/nar/gki434
call_split See protocol

[…] Éclair is a web-service that builds upon the functionality provided by Eclat to allow a user to estimate the probable origin of ESTs from within a mixed sequence collection. Éclair utilizes the core analytical pipeline from the openSputnik software (). The logic flow for […]


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ECLAT institution(s)
Institut fuer Informatik, Ludwig-Maximilians-Universitaet Muenchen, Muenchen, Germany

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