EcoliWiki specifications

Information


Unique identifier OMICS_03185
Name EcoliWiki
Restrictions to use None
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli

Maintainer


  • person_outline James C. Hu

Publication for EcoliWiki

EcoliWiki citations

 (2)
library_books

High throughput identification and rational design of synergistic small molecule pairs for combating and bypassing antibiotic resistance

2017
PLoS Biol
PMCID: 5478098
PMID: 28632788
DOI: 10.1371/journal.pbio.2001644

[…] cules). We looked for genes whose knockout mutants exhibit a significant (|Z| > 2.5) growth score to both trimethoprim and sulfamethizole (). Genes that are transcribed as a single unit (according to EcoliWiki: http://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki) were binned together. We identified 4 elements common to both chemical-genetic signatures: ECK0963-68, ECK1082-86, ECK1710-13, […]

library_books

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli

2014
Nucleic Acids Res
PMCID: 4245954
PMID: 25378333
DOI: 10.1093/nar/gku1098

[…] utationally identified and removed. We downloaded genomic locations for 5S rRNA from the UCSC Genome Browser's Rfam track (). We also downloaded the sequences of the 5S, 16S and 23S rRNAs from http://ecoliwiki.net/colipedia/index.php/Category:rRNA and used the Basic Local Alignment Search Tool () to identify their genomic locations, expanding overlapping rRNA regions to the maximum range. We then […]

EcoliWiki institution(s)
Department of Biochemistry and Biophysics, Texas Agrilife Research, Texas A&M University College Station, TX, USA

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