ECtools statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Error correction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ECtools specifications

Information


Unique identifier OMICS_26878
Name ECtools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.1
Stability Beta
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline James Gurtowski <>

ECtools in publications

 (4)
PMCID: 5418594
PMID: 28469237
DOI: 10.1038/ncomms15324

[…] from 12.7 to 18.5 mb on chromosome 6 (, and ). both boundaries of this inversion in r498 were confirmed by genome maps (). the alignments of nip pacbio sequences (http://schatzlab.cshl.edu/data/ectools/) to nip genome suggested that the nip sequences were probably also correct. we also found three smaller inversions of a few hundred kilobase whose boundaries were all validated with genome […]

PMCID: 4730604
PMID: 26823972
DOI: 10.1186/s13742-016-0108-7

[…] to very-fast; pacbiotoca [] (wgs v8.0) using the parameter length 500. corrected pacbio long reads were obtained by aligning high accuracy hiseq short reads against pacbio long reads. we also used ectools (july 6th 2014) to correct pacbio long reads from both p. nicotianae races 0 and 1. ectools aligned unitigs assembled from miseq reads against pacbio long reads to perform correction.table 1 […]

PMCID: 4671558
PMID: 26641475
DOI: 10.1371/journal.pone.0144305

[…] compared to long-read scaffolding (e.g., aha, cerulean and sspace-longread) and gap-filling (spades). for generating corrected long reads, we further examined long-read correction tools, such as ectools, lsc, lordec, pbcr pipeline and proovread. we have demonstrated that three microbial genomes including escherichia coli k12 mg1655, meiothermus ruber dsm1279 and pdeobacter heparinus dsm2366 […]

PMCID: 4719071
PMID: 26026159
DOI: 10.1093/bib/bbv029

[…] an iterative mapping and correction procedure that gradually includes more reads and allows for mapping with more mismatches in each round. thirdly, it recognizes and splits chimeric long reads., ectools [], recently published via biorxiv, pre-assembles the more accurate short reads into unitigs using the celera assembler. it then aligns the long reads against those unitigs, optimizes […]


To access a full list of publications, you will need to upgrade to our premium service.

ECtools reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ECtools