Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 13
Release date: May 15 2011
Last update date: Nov 14 2017
Access: Public
Chemicals: Nucleotides
Dataset link A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (CLIP)

Experimental Protocol


We performed duplicate experiments for each variant of the CLIP protocol (CLIP, PAR-CLIP), each protein (HuR, Ago2), and enzymatic digestion (complete T1 digestion, mild MNase digestion). In addition, we performed a single PAR-CLIP experiment with mild T1 digestion.

Repositories


GEO

GSE28859

ArrayExpress

E-GEOD-28859

ENA

SRP006474

BioProject

PRJNA153959

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