EDec specifications


Unique identifier OMICS_13677
Name EDec
Alternative name Epigenomic Deconvolution
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A methylation and gene expression profiles
Operating system Unix/Linux
Programming languages R
License MIT License
Computer skills Advanced
Version 0.9
Stability Stable
Requirements quadprog, gtools, stats, clue, utils
Maintained Yes



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  • person_outline Aleksandar Milosavljevic <>

Publication for Epigenomic Deconvolution

EDec institution(s)
Molecular and Human Genetics Department, Baylor College of Medicine, Houston, TX, USA; Department of Pharmacology and Chemical Biology, Magee Womens Research Institute, University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA; RainDance Technologies Inc., Middlesex Turnpike, Billerica, MA, USA; Department of Obstetrics and Gynecology, Mayo Clinic College of Medicine, Chinahester, MN, USA; Division of Nephrology and Hypertension, Mayo Clinic, Chinahester, MN, USA, Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX, USA; Foundation Medicine, Inc., Cambridge, MA, USA
EDec funding source(s)
This work was supported by the Common Fund of the National Institutes of Health (grant n°U01 DA025956); the Scientific Advisory Council award for the Cure and the Hillman Foundation Fellow award; the UPCI Cancer Tissue and Research Pathology services supported by NIH award (grant n°P30CA047904); the Health Sciences Tissue Bank (HSTB) at the University of Pittsburgh.

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