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Edena

Exploits the pairing information issued from inserts of potentially any length. Edena determines suited overlaps cutoffs according to the contextual coverage, reducing thus the need for manual parameterization. It relies on simultaneously exploiting the information provided by short and long paired-end sequence reads to discover paths in the assembly graph. The tool works for inserts of potentially any length by constraining possible paths.

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Edena classification

Edena specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

Edena distribution

versioning

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Edena support

Maintainer

  • David Hernandez <>

Credits

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Publications

Institution(s)

Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, Geneva, Switzerland; Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA, USA; BioMérieux, Data and Knowledge Laboratory, Marcy l’Etoile, France; Fasteris SA, Plan-les-Ouates, Switzerland

Funding source(s)

Supported by Swiss National Science Foundation (3100A0-112370/1).

Link to literature

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