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EDGE3 specifications

Information


Unique identifier OMICS_29175
Name EDGE3
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Biological technology Agilent Technologies
Operating system Unix/Linux
Programming languages Java, Javascript, PHP, R
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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Versioning


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Maintainers


  • person_outline Aaron Vollrath
  • person_outline Adam Smith
  • person_outline Mark Craven
  • person_outline Christopher Bradfield

Publication for EDGE3

EDGE3 citations

 (3)
library_books

PAHs Target Hematopoietic Linages in Bone Marrow through Cyp1b1 Primarily in Mesenchymal Stromal Cells but Not AhR: A Reconstituted In Vitro Model

2016
PMCID: 5116507
PMID: 27891153
DOI: 10.1155/2016/1753491

[…] ion kit and analysis was completed on the Whole Mouse Genome Microarray 4 × 44 slides, using the DNA Microarray Scanner and feature extraction software (Santa Clara, CA). Analysis was completed using EDGE3 software package [, ]. […]

library_books

Standardized chemical synthesis of Pseudomonas aeruginosa pyocyanin

2014
PMCID: 4472851
PMID: 26150937
DOI: 10.1016/j.mex.2014.07.001

[…] oaded pyocyanin kept in chloroform methanol mixture (12.5 ml: 12.5 ml) inside a glass cage with a paper lining35.TLC plate removed from the glass cage when the solvent front reaches 2 cm from the top edge36.TLC plate computer-scanned and image saved ()37.Silica layer with the pyocyanin carefully scraped from the glass part of the TLC plate38.Scraped silica with pyocyanin dissolved in 2 ml methanol […]

library_books

Comparing Proteomics and RISC Immunoprecipitations to Identify Targets of Epstein Barr Viral miRNAs

2012
PLoS One
PMCID: 3472983
PMID: 23091622
DOI: 10.1371/journal.pone.0047409

[…] s protocol. Equal masses of Cy3- and Cy5- labeled cRNAs were co-hybridized to microarrays for the detection of mRNAs and scanned with an Agilent DNA Microarray Scanner. Microarrays were analyzed with EDGE3 software . Statistical analyses were performed using Student’s T-test and revised false discovery rate (rFDR). The expression of mRNAs in BJAB BARTs and BJAB Empty cells was compared to the expr […]

Citations

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EDGE3 institution(s)
McArdle Laboratory for Cancer Research, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA; Department of Computer Science, University of Wisconsin-Madison, Madison, WI, USA
EDGE3 funding source(s)
Supported by the National Institutes of Health Grants R01- ES012752, T32-CA009135 and P30-CA014520.

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