edgeR specifications

Unique identifier:
OMICS_01308
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
empirical analysis of DGE in R
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
3.10.2
Requirements:
limma

Subtools

  • calcNormFactors

versioning

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No versioning.

edgeR distribution

download

edgeR support

Documentation

Additional information

http://www.bioconductor.org/packages/release/bioc/manuals/edgeR/man/edgeR.pdf

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Credits

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Publications

Institution(s)

Cancer Program, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia; Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia

Funding source(s)

Supported by National Health and Medical Research Council Program (Grant 406657), NHMRC, Independent Research Institutes Infrastructure Support Scheme (Grant 361646), Victorian State Government OIS grant, a Melbourne International Research Scholarship, Belz, Harris and IBS Honours scholarships.

User review

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1 user review

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1 user review

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Arup Ghosh's avatar image Arup Ghosh's country flag

Arup Ghosh

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edgeR is a great tool for differential expression analysis using counts.

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