edira statistics

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Citations per year

Number of citations per year for the bioinformatics software tool edira
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Tool usage distribution map

This map represents all the scientific publications referring to edira per scientific context
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Associated diseases

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Popular tool citations

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Protocols

edira specifications

Information


Unique identifier OMICS_09009
Name edira
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Martin Schäfer

Publication for edira

edira citations

 (2)
library_books

Integrative analysis of genome wide gene copy number changes and gene expression in non small cell lung cancer

2017
PLoS One
PMCID: 5675410
PMID: 29112949
DOI: 10.1371/journal.pone.0187246

[…] umber estimates. To assess the correlation between GE and CN, the externally centered correlation coefficient (ECCC) was calculated, essentially as described by Schäfer et al. [] using the R package ‘edira’ []. For each probe set, ECCC considers the equally directed deviations of CN and GE intensities from the median of an external reference group. The HapMap data set [] was used as external refer […]

call_split

An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma

2015
PLoS One
PMCID: 4605796
PMID: 26465158
DOI: 10.1371/journal.pone.0139808
call_split See protocol

[…] Our analysis flow in this study is summarized in . To identify differentially expressed genes associated with CNAs in ESCC, we applied gene expression and aCGH data to the edira algorithm []. This algorithm is characterized as the bivariate approach with the assessment of the equally directed abnormality of copy number and gene expression. Instead of a two-step approach […]


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edira institution(s)
Collaborative Research Center 475; Department of Statistics, TU Dortmund University, Dortmund, Germany; Department of Biostatistics, Johns Hopkins University, Baltimore, USA; Galenus-G.H. AG, Basel, Switzerland; MLL Munich Leukemia Laboratory, Munich; Department of Medical Informatics and Biomathematics, University of Münster, Münster, Germany
edira funding source(s)
Deutsche Forschungsgemeinschaft (SFB 475, ‘Reduction of Complexity in Multivariate Data Structures’); the European Leukemia Network of Excellence (LSHC-CT-2004); COST action BM0801 Translating genomic and epigenetic studies of MDS and AML (EuGESMA)

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