EDTSurf specifications


Unique identifier OMICS_16795
Name EDTSurf
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The protein structure, the specific options.
Output data The triangulated mesh surface, the atoms surrounding each cavity, the accessible surface area with respect to each residue, the depth with respect to each atom, the depth with respect to each residue.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Yang Zhang <>

Publications for EDTSurf

EDTSurf institution(s)
Bioinformatics and Systems Biology Program, Sanford-Burnham Medical Research Institute, San Diego, CA, USA; Integration Application Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
EDTSurf funding source(s)
The project is supported in part by the NSF Career Award (DBI 1027394), and the National Institute of General Medical Sciences (GM083107, GM084222).

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