Computational protocol: Dual Role for DsbA in Attacking and Targeted Bacterial Cells during Type VI Secretion System Mediated Competition

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Protocol publication

[…] Sequence alignments were performed using T-Coffee or MUSCLE (http://www.ebi.ac.uk/Tools/msa/). Structure models were generated using I-TASSER (). Ssp2 model was further regularized by 1 ns molecular dynamics in explicit solvent followed by energy minimization (Gromacs 2016.3; ). Structural alignments were performed in PyMol (version 1.8.6.0; Schrodinger). […]

Pipeline specifications

Software tools T-Coffee, MUSCLE, I-TASSER, GROMACS, PyMOL
Diseases Drug-Related Side Effects and Adverse Reactions