|Application:||SNP array data analysis, aCGH data analysis|
|Number of samples:||55|
|Release date:||Jul 10 2009|
|Last update date:||Mar 21 2012|
|Diseases:||Breast Neoplasms, Neoplasms|
|Dataset link||Molecular profiling of breast cancer cell lines defines relevant tumor models (aCGH)|
cDNA microarrays from the Stanford Functional Genomics Facility were used to carry out array-based Comparative Genomic Hybridization (array CGH) analysis of 52 human breast epithelial cell lines, in comparison to normal female DNA. Three reference arrays of normal male vs. normal female DNA were also done. Map positions for arrayed cDNA clones were assigned using the NCBI genome assembly, accessed through the UCSC genome browser database (NCBI Build 36). The cghFLasso method was used to call DNA gains and losses.
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