Dataset features

Specifications


Application: SNP array data analysis, aCGH data analysis
Number of samples: 55
Release date: Jul 10 2009
Last update date: Mar 21 2012
Access: Public
Diseases: Breast Neoplasms, Neoplasms
Chemicals: Estrogens
Dataset link Molecular profiling of breast cancer cell lines defines relevant tumor models (aCGH)

Experimental Protocol


cDNA microarrays from the Stanford Functional Genomics Facility were used to carry out array-based Comparative Genomic Hybridization (array CGH) analysis of 52 human breast epithelial cell lines, in comparison to normal female DNA. Three reference arrays of normal male vs. normal female DNA were also done. Map positions for arrayed cDNA clones were assigned using the NCBI genome assembly, accessed through the UCSC genome browser database (NCBI Build 36). The cghFLasso method was used to call DNA gains and losses.

Repositories


GEO

GSE13914

ArrayExpress

E-GEOD-13914

BioProject

PRJNA123169

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Contact


Jonathan Pollack

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