Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 4
Release date: Feb 9 2010
Last update date: Mar 16 2012
Access: Public
Diseases: Neoplasms, Second Primary
Dataset link Influence of environmental conditions and AI2 on the adhesion adaptive response of Lactobacillus acidophilus NCFM

Experimental Protocol


A single 20 mL culture of L. acidophilus was grown in MRS to OD600 of 0.6, divided into two 10 ml aliquots, and harvested by centrifugation for 8 min at 3,150 x g. One aliquot was resuspended in 10 ml of fresh MRS (Sample "control"), the other resuspended in 1 ml of fresh MRS (Sample "test"). Both cultures were then incubated for 1 hr at 37°C. Following incubation, cells were harvested by centrifugation and frozen immediately in a dry ice-ethanol bath. RNA isolation was conducted according to the protocol described previously (Azcarate-Peril et al., 2005). Two slides, each containing the complete genome of L. acidophilus NCFM spotted in triplicate, were hybridized reciprocally to Cy3- and Cy5-labeled probes per experiment (dye swap) for each of two biological replicates.

Repositories


GEO

GSE5674

BioProject

PRJNA96955

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Contact


Todd Klaenhammer