EFICAz protocols

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EFICAz specifications

Information


Unique identifier OMICS_22391
Name EFICAz
Alternative names Enzyme Function Inference by a Combined Approach, EFICAz2, EFICAz2.5
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 2.5
Maintained No

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Information


Unique identifier OMICS_22391
Name EFICAz
Alternative names Enzyme Function Inference by a Combined Approach, EFICAz2, EFICAz2.5
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 2.5
Maintained No

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Publications for Enzyme Function Inference by a Combined Approach

EFICAz in pipelines

 (3)
2016
PMCID: 5310847
PMID: 27869790
DOI: 10.1038/nmicrobiol.2016.216

[…] identified by both priam and kaas. reaction assignments to metabolic pathways and pathway hole filling were performed using pathway tools v18.0 (ref. ). those predictions with support from either eficaz, priam or blastp were used to augment the high-confidence set of predictions. in addition, novel pathway tool predictions to genes that were previously unannotated were also incorporated., […]

2012
PMCID: 3388012
PMID: 22452820
DOI: 10.1186/1471-2164-13-120

[…] to validate tree topologies. phylip's seqboot was used to create 1000 bootstrap input replicates for each tree. phylip's consense was used to obtain a bootstrap tree (additional file : figure s4), eficaz [] was used to assign ec numbers for proteins in all 31 organisms. metabolic pathways were constructed in biocyc [,]. an orthogroup was considered to be part of a metabolic pathway […]

2008
PMCID: 2330069
PMID: 18461135
DOI: 10.1371/journal.pone.0002103

[…] strain 2cp-c genome sequence has been assigned embl accession number cp000251., in addition to automated annotation provided by jgi, the high precision multi-genome scale annotation tool eficaz was applied for refined annotation , . phylogenetic and molecular evolutionary analyses based on 16s rrna gene sequences comparisons were conducted using mega version 3.1 . clustalw was used […]


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EFICAz in publications

 (193)
PMCID: 5886384
PMID: 29621256
DOI: 10.1371/journal.pcbi.1005756

[…] motifs exemplified by fuzzy functional forms [] and patterns in non-homologous tertiary structures (pints) [], or methods that use structure to inform sequence, such as catalytic site atlas [] and enzyme function inference by a combined approach (eficaz) []. all of these methods identify patterns of amino acids that correlate with a given function. to predict a functional site, a sequence […]

PMCID: 5799939
PMID: 29430325
DOI: 10.4103/sni.sni_280_17

[…] 8.81 ± 0.62 a 2.12 ± 0.89 (p < 0.0001). el 77.5% presentó fusión en los grados 1 y 2 de bridwel al año del procedimiento quirúrgico., el elif es una alternativa de tratamiento quirúrgico segura y eficaz. se pueden lograr resultados clínicos satisfactorios comparables con las técnicas tradicionales con la resección facetaria limitada al proceso articular superior., the objective of the present […]

PMCID: 5799945
PMID: 29430326
DOI: 10.4103/sni.sni_281_17

[…] un caso en el cuál la fijación occípito cervical seguida de una resección endoscópica transnasal de la apófisis odontoides y del tejido inflamatorio nos ha permitido abordar en forma segura y eficaz una patología compleja, con buena respuesta al tratamiento., una paciente femenina de 76 años, con antecedentes de hipertensión, diabetes tipo ii, ex - tabaquismo y obesidad fue derivada […]

PMCID: 5771781
PMID: 29367907
DOI: 10.1016/j.rboe.2017.11.010

[…]  0,66). em ambos os grupos, não houve diferença estatística relacionada ao número de osteoblastos (p = 0,2), osteoclastos (p = 0,2) e células inflamatórias (p = 0,4)., o etil-2-cianoacrilato foi mais eficaz do que o butil-2-cianoacrilato no tratamento de fraturas em ratos., the use of synthetic adhesives in medical practice has drawn the attention of researchers worldwide. the ideal adhesive shoul […]

PMCID: 5800737
PMID: 29435199
DOI: 10.1080/20008198.2017.1380470

[…] que los juegos de palabras eran más difíciles que el tetris., conclusiones: la aplicación de una tarea 4 días después de la película del trauma (durante la reconsolidación de la memoria) fue eficaz. la modalidad versus el problema de la carga de la memoria de trabajo no es concluyente., 背景:对ptsd诊断a1标准的讨论一直持续进行,dsm-5使用了更严格的a1标准,icd-11则将其从关键诊断标准中删除。, […]


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EFICAz institution(s)
Center for Study of Systems Biology, School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
EFICAz funding source(s)
Supported in part by grant no. GM-48835 of the Division of General Medical Sciences of the National Institutes of Health.

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