eFindSitePPI statistics
eFindSitePPI specifications
Information
Unique identifier | OMICS_08144 |
---|---|
Name | eFindSitePPI |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | Academic or non-commercial use |
Operating system | Unix/Linux |
License | GNU General Public License version 2.0 |
Computer skills | Advanced |
Version | 1.0 |
Stability | Stable |
Maintained | No |
Versioning
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Maintainer
Information
Unique identifier | OMICS_08144 |
---|---|
Name | eFindSitePPI |
Interface | Web user interface |
Restrictions to use | Academic or non-commercial use |
Computer skills | Basic |
Version | 1.0 |
Stability | Stable |
Maintained | No |
Maintainer
Publication for eFindSitePPI
eFindSitePPI in publications
(3)Across proteome modeling of dimer structures for the bottom up assembly of protein protein interaction networks
[…] methodology for the bottom-up assembly of protein-protein interaction networks., the pipeline to model ppis is benchmarked on the bm1905 dataset (available at http://www.brylinski.org/content/efindsiteppi-datasets), which was previously compiled to evaluate the accuracy of interface residue prediction and the re-ranking of docked models [, ]. this dataset contains experimental target […]
[…] predicting the possible topology and localization of pr-1 protein. the prediction of protein-protein interaction sites was performed using the efindsite server (http://brylinski.cct.lsu.edu/content/efindsiteppi-webserver) []., the homology modeling method of swiss-model workspace (http://swissmodel.expasy.org/) [–] and the iterative threading assembly method of i-tasser server […]
[…] machines. for instance the vorffip method [] makes use of tens of descriptors and integrates them in a two-step random forest classifier. other machine learning approaches, such as predus [] and efindsiteppi [], rely on the hypothesis that protein-protein interfaces are structurally conserved: they map experimentally characterized interfaces of structurally similar proteins onto the target […]
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