eFindSitePPI statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

eFindSitePPI specifications

Information


Unique identifier OMICS_08144
Name eFindSitePPI
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_08144
Name eFindSitePPI
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 1.0
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for eFindSitePPI

eFindSitePPI citations

 (3)
library_books

Across proteome modeling of dimer structures for the bottom up assembly of protein protein interaction networks

2017
BMC Bioinformatics
PMCID: 5427563
PMID: 28499419
DOI: 10.1186/s12859-017-1675-z

[…] ocedure developed in this study correctly identified these proteins to be interaction partners with the putative fadJ/fadI hetero-dimer shown in Fig. . A protein binding site confidently predicted by eFindSitePPI on fadJ comprises 11 residues, out of which 9 are also found at the interface in the modeled fadJ/fadI complex. Moreover, fadJ has a NAD binding domain according to the Pfam database []. […]

library_books

Molecular Cloning of HbPR 1 Gene from Rubber Tree, Expression of HbPR 1 Gene in Nicotiana benthamiana and Its Inhibition of Phytophthora palmivora

2016
PLoS One
PMCID: 4940168
PMID: 27337148
DOI: 10.1371/journal.pone.0157591

[…] r predicting the possible topology and localization of PR-1 protein. The prediction of protein-protein interaction sites was performed using the eFindsite server (http://brylinski.cct.lsu.edu/content/efindsiteppi-webserver) []. […]

call_split

Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein Protein Interactions

2015
PLoS Comput Biol
PMCID: 4686965
PMID: 26690684
DOI: 10.1371/journal.pcbi.1004580
call_split See protocol

[…] interfaces at large scale. To evaluate the relevance of our approach, we compared the results of iJET2 to those of three state-of-the-art methods that use machine learning, namely VORFFIP, PredUs and eFindSitePPI.The VORFFIP method [] integrates a broad set of residue descriptors—including solvent accessibility, energy terms, sequence conservation, crystallographic B-factors and Voronoi Diagrams-d […]

Citations

Looking to check out a full list of citations?

eFindSitePPI institution(s)
Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, USA

eFindSitePPI reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review eFindSitePPI