eFindSitePPI statistics

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eFindSitePPI specifications

Information


Unique identifier OMICS_08144
Name eFindSitePPI
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained No

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Information


Unique identifier OMICS_08144
Name eFindSitePPI
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 1.0
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for eFindSitePPI

eFindSitePPI in publications

 (3)
PMCID: 5427563
PMID: 28499419
DOI: 10.1186/s12859-017-1675-z

[…] methodology for the bottom-up assembly of protein-protein interaction networks., the pipeline to model ppis is benchmarked on the bm1905 dataset (available at http://www.brylinski.org/content/efindsiteppi-datasets), which was previously compiled to evaluate the accuracy of interface residue prediction and the re-ranking of docked models [, ]. this dataset contains experimental target […]

PMCID: 4940168
PMID: 27337148
DOI: 10.1371/journal.pone.0157591

[…] predicting the possible topology and localization of pr-1 protein. the prediction of protein-protein interaction sites was performed using the efindsite server (http://brylinski.cct.lsu.edu/content/efindsiteppi-webserver) []., the homology modeling method of swiss-model workspace (http://swissmodel.expasy.org/) [–] and the iterative threading assembly method of i-tasser server […]

PMCID: 4686965
PMID: 26690684
DOI: 10.1371/journal.pcbi.1004580

[…] machines. for instance the vorffip method [] makes use of tens of descriptors and integrates them in a two-step random forest classifier. other machine learning approaches, such as predus [] and efindsiteppi [], rely on the hypothesis that protein-protein interfaces are structurally conserved: they map experimentally characterized interfaces of structurally similar proteins onto the target […]


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eFindSitePPI institution(s)
Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, USA

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