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eFindSitePPI specifications
Information
| Unique identifier | OMICS_08144 |
|---|---|
| Name | eFindSitePPI |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | Academic or non-commercial use |
| Operating system | Unix/Linux |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Stable |
| Maintained | No |
Versioning
No version available
Maintainer
Information
| Unique identifier | OMICS_08144 |
|---|---|
| Name | eFindSitePPI |
| Interface | Web user interface |
| Restrictions to use | Academic or non-commercial use |
| Computer skills | Basic |
| Version | 1.0 |
| Stability | Stable |
| Maintained | No |
Maintainer
Publication for eFindSitePPI
eFindSitePPI citations
(3)Across proteome modeling of dimer structures for the bottom up assembly of protein protein interaction networks
[…] ocedure developed in this study correctly identified these proteins to be interaction partners with the putative fadJ/fadI hetero-dimer shown in Fig. . A protein binding site confidently predicted by eFindSitePPI on fadJ comprises 11 residues, out of which 9 are also found at the interface in the modeled fadJ/fadI complex. Moreover, fadJ has a NAD binding domain according to the Pfam database []. […]
Molecular Cloning of HbPR 1 Gene from Rubber Tree, Expression of HbPR 1 Gene in Nicotiana benthamiana and Its Inhibition of Phytophthora palmivora
[…] r predicting the possible topology and localization of PR-1 protein. The prediction of protein-protein interaction sites was performed using the eFindsite server (http://brylinski.cct.lsu.edu/content/efindsiteppi-webserver) []. […]
Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein Protein Interactions
[…] interfaces at large scale. To evaluate the relevance of our approach, we compared the results of iJET2 to those of three state-of-the-art methods that use machine learning, namely VORFFIP, PredUs and eFindSitePPI.The VORFFIP method [] integrates a broad set of residue descriptors—including solvent accessibility, energy terms, sequence conservation, crystallographic B-factors and Voronoi Diagrams-d […]
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