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Information


Unique identifier OMICS_26864
Name eGOn
Alternative name Explore Gene Ontology
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

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https://s3-us-west-2.amazonaws.com/webcitation/3d81695ffc2513c1db6ca254dc873d6d7a45882e

Publication for Explore Gene Ontology

eGOn citations

 (7)
library_books

Comparative genomic analysis of duplicated homoeologous regions involved in the resistance of Brassica napus to stem canker

2015
Front Plant Sci
PMCID: 4585320
PMID: 26442081
DOI: 10.3389/fpls.2015.00772

[…] ined genes. We took advantage of the recently released B. napus genome sequence (Chalhoub et al., ) for the structural analysis of the duplicated regions. B. napus—A. thaliana relatedness was used to explore gene ontology (GO) categories and the function of genes located in the duplicated regions. According to the functions of the genes that were retained in all duplicated regions or were specific […]

call_split

3T3 Cell Lines Stably Expressing Pax6 or Pax6(5a) – A New Tool Used for Identification of Common and Isoform Specific Target Genes

2012
PLoS One
PMCID: 3285655
PMID: 22384097
DOI: 10.1371/journal.pone.0031915
call_split See protocol

[…] ery (DAVID) , was used. We used the lists of up- or downregulated genes (threshold 1) as inputs. A list of all genes on the Illumina Mouse Ref-8 V1.1 chip was provided as reference (background). The eGOn database (http://www.genetools.microarray.ntnu.no/adb/index.php) was used to compare the list (both threshold 1 and threshold 2) of upregulated genes with the list of downregulated genes.For Pax […]

library_books

Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda

2011
BMC Immunol
PMCID: 3206475
PMID: 22003892
DOI: 10.1186/1471-2172-12-58

[…] ffs for the ratios were set at 1.5-fold change at P < 10-4 for analysis at UniGene cluster level and P < 10-5 for analysis at probe level.Gene ontology (GO) analysis was performed using the GeneTools eGOn v2.0 web-based gene ontology analysis software (http://www.genetools.microarray.ntnu.no) []. KEGG pathway analysis was performed using DAVID tools for functional annotation (http://david.abcc.nci […]

library_books

ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis

2008
BMC Genomics
PMCID: 2390552
PMID: 18442396
DOI: 10.1186/1471-2164-9-196

[…] 0-5 to compensate for multiple testing false positives.For Gene Ontology analysis, the Unigene ID-linked gene expression signature sets of the ERK1 and ERK2 morphants were uploaded into the GeneTools eGOn V2.0 web-based gene ontology analysis software (explore Gene Ontology, database build #97) []. These signature sets comprised 575 Unigene IDs in the case of ERK1 morphants and 2987 Unigene IDs in […]

library_books

Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts

2007
PMCID: 2200676
PMID: 17828398
DOI: 10.1007/s00360-007-0201-4

[…] ding to known functions (Table ). Genes can have more than one particular function assigned, so some genes can appear in more than one group. In addition, a gene ontology analysis was performed using eGOn to determine gene enrichment and overrepresentation in the three categories of molecular function, biological processes and cellular components (Supplemental Data 1 and 2). Proteinbiosynthesis (T […]

call_split

Genomic responses in rat cerebral cortex after traumatic brain injury

2005
BMC Neurosci
PMCID: 1310614
PMID: 16318630
DOI: 10.1186/1471-2202-6-69
call_split See protocol

[…] falsely identified as regulated among the 150 upregulated 1 dpi and one gene among those identified 4 dpi. Data has been deposited in Gene Expression Omnibus [].We used the web based tool eGOn v 1.0 (explore Gene Ontology, developed at the Norwegian University of Science and Technology) [] to functionally classify the transcripts. A total of 3414 genes 1 dpi and 2242 genes 4 dpi were deposited in […]

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eGOn institution(s)
Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway; Department of Mathematical Sciences, Norwegian University of Science and Technology, Trondheim, Norway; Department of Computer and Information Science, Norwegian University of Science and Technology, Trondheim, Norway; Department of Medicine, St. Olav's University Hospital, Trondheim, Norway
eGOn funding source(s)
Supported by the National Microarray Technology platform (Norwegian Microarray Consortium, NMC), which is funded by the Functional genomics program (FUGE) of the Norwegian Research Council.

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