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Information


Unique identifier OMICS_01886
Name EID
Alternative name Exon-Intron Database
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Exon-intron_database

Publications for Exon-Intron Database

EID citations

 (4)
library_books

The paralog to contig assignment problem: high quality gene models from fragmented assemblies

2016
PMCID: 4765045
PMID: 26913054
DOI: 10.1186/s13015-016-0063-y

[…] lts and cannot easily be identified by automatic means.At present, there are no databases that simultaneously provide both, paralogy information and accurate information on exon-intron structure. The Exon-Intron database (EID) [] and SpliceDB [] do not provide information on paralogs; Ensembl Compara on the other hand, does not provide homology information for individual exons. The lack of a gold […]

library_books

Adaptive mutation in influenza A virus non structural gene is linked to host switching and induces a novel protein by alternative splicing

2012
PMCID: 3630925
PMID: 26038410
DOI: 10.1038/emi.2012.38

[…] Consensus sequence of splice site is bases of alignment of known human donor and acceptor site sequences extracted from EID (Exon-Intron database). Generation of sequence logos was done by WebLogo. […]

library_books

The role of transposable elements in the evolution of non mammalian vertebrates and invertebrates

2010
Genome Biol
PMCID: 2911107
PMID: 20525173
DOI: 10.1186/gb-2010-11-6-r59

[…] he UCSC genome browser and GALAXY [,,]. Introns of chicken (G. gallus, build 1.1), zebrafish (D. rerio, release Zv4), C. elegans (release 2003) and D. melanogaster (build 4.1) were extracted from the Exon-Intron Database [,]. When alternatively spliced isoforms of the same gene were present, only the first annotated isoform was extracted; all other isoforms were excluded in order to avoid redundan […]

library_books

The Peculiarities of Large Intron Splicing in Animals

2009
PLoS One
PMCID: 2773006
PMID: 19924226
DOI: 10.1371/journal.pone.0007853

[…] The sequences of non-redundant, large introns (>50 kb) were obtained from the Exon-Intron Database . Our datasets are available upon request. , , and – used these datasets. For the human intergenic region RP-site analysis we used the same data set as in , which contains over 3. […]

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EID institution(s)
Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA

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