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|Alternative name||Exon-Intron Database|
|Restrictions to use||None|
Publications for Exon-Intron Database
The paralog to contig assignment problem: high quality gene models from fragmented assemblies
[…] lts and cannot easily be identified by automatic means.At present, there are no databases that simultaneously provide both, paralogy information and accurate information on exon-intron structure. The Exon-Intron database (EID)  and SpliceDB  do not provide information on paralogs; Ensembl Compara on the other hand, does not provide homology information for individual exons. The lack of a gold […]
Adaptive mutation in influenza A virus non structural gene is linked to host switching and induces a novel protein by alternative splicing
[…] Consensus sequence of splice site is bases of alignment of known human donor and acceptor site sequences extracted from EID (Exon-Intron database). Generation of sequence logos was done by WebLogo. […]
The role of transposable elements in the evolution of non mammalian vertebrates and invertebrates
[…] he UCSC genome browser and GALAXY [,,]. Introns of chicken (G. gallus, build 1.1), zebrafish (D. rerio, release Zv4), C. elegans (release 2003) and D. melanogaster (build 4.1) were extracted from the Exon-Intron Database [,]. When alternatively spliced isoforms of the same gene were present, only the first annotated isoform was extracted; all other isoforms were excluded in order to avoid redundan […]
The Peculiarities of Large Intron Splicing in Animals
[…] The sequences of non-redundant, large introns (>50 kb) were obtained from the Exon-Intron Database . Our datasets are available upon request. , , and – used these datasets. For the human intergenic region RP-site analysis we used the same data set as in , which contains over 3. […]
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