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|Interface||Command line interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
|Source code URL||https://codeload.github.com/tacorna/taco/tar.gz/v0.7.0|
No version available
- Documentation: http://elastix.bigr.nl/wiki/index.php/Main_Page
- person_outline Stefan Klein
Publications for elastix
Motion compensated micro CT reconstruction for in situ analysis of dynamic processes
[…] nsion basis is constructed out of a B-spline tensor products, which are now used to approximate three displacement components,The MVF is thus described by a parameter vector field w¯=[wx,wy,wz]. The ‘elastix’ toolbox, which is also exposed to Python through the SimpleElastix module, was used to optimise this parameter vector towards a maximalistion of the ‘Normalised Cross Correlation’ (NCC) metri […]
NiftyNet: a deep learning platform for medical imaging
[…] edical imaging file formats (e.g. ACR-NEMA (1985), Analyze 7.5 (1986), DICOM (1992) MINC (1992), and NIfTI (2001)). Toolsets to solve common challenges such as registration (e.g. NiftyReg , ANTs and elastix ), segmentation (e.g. NiftySeg ), and biomechanical modeling (e.g. ) are available for use as part of image analysis pipelines. Pipelines for specific research applications such as FSL for fu […]
The Additional Contribution of White Matter Hyperintensity Location to Post stroke Cognitive Impairment: Insights From a Multiple Lesion Symptom Mapping Study
[…] red to the 1-mm T1 MNI-152 (Montreal Neurological Institute) template (Fonov et al., ). The registration procedure was performed with a linear registration followed by a non-linear registration using elastix (Klein et al., ), and the resulting transformations were combined to transform the corresponding lesion maps of AIL and WMHs to the MNI-152 template. Rigorous quality checks of the registratio […]
Dosimetric feasibility of 4DCT ventilation imaging guided proton therapy for locally advanced non small cell lung cancer
[…] ng the location of each tagged grid between the exhalation and the inhalation images. The DVF generated from seven DIR algorithms were compared to the ground truth DVF included Velocity, MIM, Mirada, Elastix and 3 other in-house built algorithms from DIRART toolbox as Double Force Demons, Improved Lucas-Kanade, and Iterative Optical Flow. Among all algorithm, the Multi-pass B-spline based deformab […]
Comparison of six fit algorithms for the intra voxel incoherent motion model of diffusion weighted magnetic resonance imaging data of pancreatic cancer patients
[…] fram Research, Champaign, U.S.A.).All DWI images were denoised using a Rician adaptive non-local means filter , developed for spatially varying noise due to i.e. parallel imaging, and registered in Elastix [,] for details).We tested two Bayesian algorithms: IVIM-Bayesian-log [,] and IVIM-Bayesian-lin . The IVIM-Bayesian-log was an implementation from the Bayesian approach described in detail […]
Does setup on rectal wall improve rectal cancer boost radiotherapy?
[…] egistered to each daily scan, mimicking the set-up on bony anatomy which is performed prior to each fraction of radiotherapy. These rigid registrations were done using the ‘Euler’ registration of the Elastix toolkit . Registration accuracy was checked by visual inspection of bony alignment and errors were found to be limited to one voxel.Using the transformation matrix of the registration, delin […]
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