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Popular tool citations

chevron_left Metabolite identification Chromatogram alignment Peak detection Statistical analysis Clustering/Classification Statistical analysis Metabolite quantification Spectral visualization chevron_right

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Scaffold Elements specifications


Unique identifier OMICS_25018
Name Scaffold Elements
Alternative name Elements for Metabolomics
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Biological technology Agilent Technologies
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 2.0.0
Stability Stable
Free trial No
Maintained Yes




No version available



  • person_outline Brian C. Searle
  • person_outline Scaffold Q+ Team

Additional information

Publication for Scaffold Elements

Scaffold Elements citation


Serial omics of P53−/−, Brca1−/− Mouse Breast Tumor and Normal Mammary Gland

Sci Rep
PMCID: 5674068
PMID: 29109428
DOI: 10.1038/s41598-017-15132-y

[…] to 70,000 for ms1 and 35,000 for ms2. ms1 and ms2 target values were set to 5e5 and 1e6, respectively. lipidomics data were analyzed using lipidsearch 4.1.9 software (thermo fisher scientific) and elements for metabolomics (proteome software) nist database incorporated., half of the metabolite samples were re-suspended in 20 μl lc/ms grade water, 5 μl were injected over a 15 min gradient using […]

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Scaffold Elements institution(s)
Proteome Software, Portland, OR, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA

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