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ElliPro specifications

Information


Unique identifier OMICS_03958
Name ElliPro
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ElliPro

ElliPro in publications

 (54)
PMCID: 5929558
PMID: 29715318
DOI: 10.1371/journal.pone.0196484

[…] of hrhpvs e6 proteins restricted to 12 human hlas to aid the development of peptide vaccines against hrhpvs. conformational b-cell and ctl epitopes were predicted for hrhpvs e6 proteins using ellipro and netctl. the potential of the predicted peptides were tested and validated by using systems biology approach considering experimental concentration. we also investigated the binding […]

PMCID: 5840964
PMID: 29531919
DOI: 10.4103/abr.abr_10_17

[…] bcpred server was used for prediction of continuous b-cell epitopes (20 mers) of the l7/l12-somp2b.[] prediction of discontinuous b-cell epitopes from 3d protein structure was performed using ellipro antibody epitope prediction tool.[], prediction of allergenicity of the fusion protein has been done using algpred tool.[], b. abortus 544 chromosomal dna was extracted using dna extraction […]

PMCID: 5802602
PMID: 29434468
DOI: 10.1177/1177932218755348

[…] 2017 software with probe radius of 1.4 ǻ. exposed residues were calculated to have a maximum rsa value greater than 25% and buried residues were calculated to have a maximum rsa of less than 10%.,, ellipro epitope prediction software was used to obtain predicted linear epitopes, predicted discontinuous epitopes, and residue values for the appropriate proteins. homology model pdb files were used […]

PMCID: 5773588
PMID: 29348555
DOI: 10.1038/s41598-018-19456-1

[…] for the epitope of 20 amino acids long. the specificity threshold was set to be by default at 75% to get the result in a user-friendly format. while conformational epitopes were predicted using ellipro server for the input of tertiary protein structure of vaccine construct., antigenicity determines the ability of an antigen to binds with the b- and t-cell receptor that may lead […]

PMCID: 5747437
PMID: 29287083
DOI: 10.1371/journal.pone.0189905

[…] of the 3d structure of arabian camel hspb-1 and human hspb-1 were 44.6 and 65.9, respectively., the epitope regions of arabian camel hspb-1 protein based on its 3d structure were predicted using ellipro server (http://tools.iedb.org/ellipro/). four discontinuous peptides were identified having score value of > 0.7. the highest probability of a discontinuous epitope was computed as 78.5%. […]


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ElliPro institution(s)
San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA

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