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Protocols

eLMM specifications

Information


Unique identifier OMICS_05041
Name eLMM
Alternative name Eliminate Confouding in eQTL studies with Linear Mixed Models
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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No version available

Publication for Eliminate Confouding in eQTL studies with Linear Mixed Models

eLMM citation

call_split

Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies

2014
Genome Biol
PMCID: 4053820
PMID: 24708878
DOI: 10.1186/gb-2014-15-4-r61
call_split See protocol

[…] s, SVA [], ICE [], LMM-EH [] and PANAMA [], we downloaded the program available from the authors and ran it using default options. For running SVA, the ‘two-step’ method was used. For running LMM-EH, eLMM v1.2 was used for generating the covariance matrix KEH and FaST-LMM v2.05 [] was used for calculating the associations. For running eLMM, the ICE covariance matrix was used for the initial KEH. T […]


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eLMM institution(s)
Microsoft Research, Los Angeles, CA, USA

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