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ELPH specifications

Information


Unique identifier OMICS_24617
Name ELPH
Alternative name Estimated Locations of Pattern Hits
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set containing anywhere from a few dozen to thousands of sequences.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Additional information


http://cbcb.umd.edu/software/ELPH/man.shtml

ELPH citation

library_books

Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

2015
PMCID: 5064606
PMID: 26580858
DOI: 10.1002/biot.201400827

[…] whole‐genome gene predictions were performed using the interpolated markov model . long orfs were scanned by glimmer 3.0 to generate the training set. start codon usage was then analyzed with the estimated locations of pattern hits software from http://cbcb.umd.edu/software/elph/. genetic table 11 was used for gene prediction., figure summarizes the steps taken to integrate illumina […]


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