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EM3D specifications

Information


Unique identifier OMICS_27807
Name EM3D
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2.0
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Uel McMahan

Additional information


http://em3d.stanford.edu/about.html

Publication for EM3D

EM3D citations

 (3)
library_books

Alignment of Synaptic Vesicle Macromolecules with the Macromolecules in Active Zone Material that Direct Vesicle Docking

2013
PLoS One
PMCID: 3718691
PMID: 23894473
DOI: 10.1371/journal.pone.0069410

[…] S (0.76±0.55 nm RMS). The reconstructions were made by a weighted back-projection method. Both the alignment and reconstruction algorithms are in the unified software package for electron tomography, EM3D (em3d.stanford.edu) , . The 3D spatial resolution was 2–3 nm for high contrast structures such as the cytoplasmic and extracellular layers of the plasma membrane . […]

library_books

Deposition of Biogenic Iron Minerals in a Methane Oxidizing Microbial Mat

2013
PMCID: 3697272
PMID: 23843725
DOI: 10.1155/2013/102972

[…] mately 715 eV of the deposits in embedded and ultrathin sectioned biofilms. Goniometry was performed by tilting 300 nm sections ±60 degrees with 1-degree increments. Tomograms were performed with the EM3D 2.0 software package (Department of Neurobiology, Stanford University []). […]

library_books

Regulation of Synaptic Vesicle Docking by Different Classes of Macromolecules in Active Zone Material

2012
PLoS One
PMCID: 3306385
PMID: 22438915
DOI: 10.1371/journal.pone.0033333

[…] .6) root mean square. The reconstructions were made by a weighted back-projection method. Both the alignment and reconstruction algorithms are in the unified software package for electron tomography, EM3D (em3d.stanford.edu) , . The spatial resolution was 2–3 nm for high contrast structures such as the cytoplasmic and extracellular layers of the plasma membrane .None of the vesicles in our data se […]

Citations

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EM3D institution(s)
Department of Neurobiology, Stanford University School of Medicine, Stanford, CA, USA
EM3D funding source(s)
Supported by NIH training grant 5T32 NS 07158, the M.A Antelman Fund and NIH research grant 2R01 NS 14506.

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