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EMAP specifications


Unique identifier OMICS_21028
Alternative name e-Mouse Atlas Project
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • Rodents
    • Mus musculus

Publications for e-Mouse Atlas Project

EMAP citations


The INO80 chromatin remodeler sustains metabolic stability by promoting TOR signaling and regulating histone acetylation

PLoS Genet
PMCID: 5834206
PMID: 29462149
DOI: 10.1371/journal.pgen.1007216
call_split See protocol

[…] y (GO) enrichments were determined from GO annotations retrieved using the org.Sc.sgd.db R package (Bioconductor) after applying a multiple hypothesis corrected hypergeometric test using genes in the EMAP test library as background with a custom script.Genome wide ChIP-seq correlations were performed using the Genome Track Analyzer [] on uniformly processed tracks using segment midpoints and consi […]


Association of breast cancer risk in BRCA1 and BRCA2 mutation carriers with genetic variants showing differential allelic expression: identification of a modifier of breast cancer risk at locus 11q22.3

Breast Cancer Res Treat
PMCID: 5222911
PMID: 27796716
DOI: 10.1007/s10549-016-4018-2

[…] The influence of germline genetic variations on gene expression was assessed using a linear regression model, as implemented in the R library eMAP (http://www.bios.unc.edu/~weisun/software.htm). An additive effect was inferred by modeling subjects’ copy number of the rare allele, i.e., 0, 1, or 2 for a given genotype. Only relationships in […]


Fine scale mapping of the 17q22 breast cancer locus using dense SNPs, genotyped within the Collaborative Oncological Gene Environment Study (COGs)

Sci Rep
PMCID: 5013272
PMID: 27600471
DOI: 10.1038/srep32512

[…] analysis. The influence of SNPs on local gene expression (transcripts within 1 MB from the most strongly associated SNP) was assessed using a linear regression model, as implemented in the R library eMAP. An additive effect was assumed by modelling the patient’s number of copies of the rare allele, i.e. 0, 1 or 2 for a given genotype. Correction for multiple testing was performed using the false […]


Geography of Genetic Structure in Barley Wild Relative Hordeum vulgare subsp. spontaneum in Jordan

PLoS One
PMCID: 4981475
PMID: 27513459
DOI: 10.1371/journal.pone.0160745

[…] Geographical coordinates, altitude, slope, and aspect of the collecting sites were recorded with a GPS Garmin Emap device (datum: WGS84) and habitat type was recorded. Climate data was obtained from the WorldClim database version 1.4 (http://www.worldclim.org), a global and freely available source for climate […]


Epigenetic regulation of lncRNA connects ubiquitin proteasome system with infection inflammation in preterm births and preterm premature rupture of membranes

PMCID: 4335366
PMID: 25884766
DOI: 10.1186/s12884-015-0460-0

[…] eam signaling of the IL-6 and cytokine receptor interaction pathway. The last gene in this category was EML4, which encodes a novel microtubule-associated protein belonging to the conserved family of EMAP-like proteins. EML4 has been demonstrated to be essential for microtubule formation []. Up-regulated expression of EML4 mRNA might imply that microtubule formation of the cytoskeleton in fetal me […]


The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio

J Biomed Semantics
PMCID: 3944782
PMID: 24568621
DOI: 10.1186/2041-1480-5-12

[…] BSPO: Spatial Ontology; CARO: Common Anatomy Reference Ontology; CL: Cell Ontology; CRISPR: Clustered Regularly Interspaced Short Palindromic Repeats; EMAP: Mouse Gross Anatomy and Development Ontology; EQ: Entity-Quality; EQE: Entity-Quality-Entity; FBbt: Drosophila Gross Anatomy; GO: Gene Ontology; GO-BP: GO Biological Process Ontology; GO-CC: GO […]


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EMAP institution(s)
MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK

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