EMASE pipeline

EMASE specifications

Information


Unique identifier OMICS_07469
Name EMASE
Alternative name Expectation-Maximization algorithm for Allele Specific Expression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM, GTF
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.10.16
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Gary Churchill <>
  • person_outline Kwangbom Choi <>

Additional information


https://emase.readthedocs.io/en/latest/readme.html

Publications for Expectation-Maximization algorithm for Allele Specific Expression

EMASE citation

2017
PMCID: 5345717

[…] to the joint transcriptome using bowtie, allowing no more than 3 mismatches and reporting all alignments of the stratum containing the fewest number of mismatches (langmead et al. 2009). next, emase (choi 2016b) was used to quantify the number of reads from both the maternal and paternal allele. each end of the paired-end samples was processed separately and only reads aligning […]

EMASE institution(s)
The Jackson Laboratory, Bar Harbor, ME, USA; The University of North Carolina, Chapel Hill, NC, USA

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