eMatchSite specifications

Unique identifier:
OMICS_10538
Interface:
Command line interface
Input data:
two protein structures
Output data:
A single file that containing: numerical scores for the constructed alignment of binding sites, aligned residue pairs with the corresponding Cα-Cα distances, transformation matrices to superpose the second protein onto the first protein, and the coordinates of the second protein upon the superposition of two binding sites.
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
PDB
Output format:
PDB
Programming languages:
C++
Computer skills:
Advanced
Requirements:
zlib, gzstream, libsvm

versioning

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eMatchSite specifications

Unique identifier:
OMICS_10538
Restrictions to use:
None
Input format:
PDB
Output format:
PDB
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
two protein structures
Output data:
A single file that containing: numerical scores for the constructed alignment of binding sites, aligned residue pairs with the corresponding Cα-Cα distances, transformation matrices to superpose the second protein onto the first protein, and the coordinates of the second protein upon the superposition of two binding sites.
Programming languages:
C++
Stability:
Stable

eMatchSite support

Maintainer

  • Michal Brylinski <>
  • Michal Brylinski <>

Additional information

http://brylinski.cct.lsu.edu/content/ematchsite-manual

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Publications

Institution(s)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA

Funding source(s)

Supported by the National Institute of General Medical Sciences of the National Institutes of Health under Award Number R35GM119524.

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