EMI specifications

Information


Unique identifier OMICS_02186
Name EMI
Alternative name Efficient Multiple-IBD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained No

Versioning


No version available

Publication for Efficient Multiple-IBD

EMI citation

library_books

PIGS: improved estimates of identity by descent probabilities by probabilistic IBD graph sampling

2015
BMC Bioinformatics
PMCID: 4402697
PMID: 25860540
DOI: 10.1186/1471-2105-16-S5-S9

[…] D probabilities. IBD calls can be made from IBD probabilities using a thresholding approach in which all probabilities exceeding a threshold are output as IBD. Alternatively, methods such as DASH [], EMI [], and IBD-Groupon [] leverage the clique nature of IBD graphs to output cliques over a region as opposed to IBD pairs. The choice of IBD calling method is a function of the objective of the stud […]

EMI institution(s)
Bioinformatics Research Center, Aarhus Universitet, Aarhus, Denmark; Department of Biostatistics and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA

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