EMMIX-JCM specifications

Unique identifier:
Command line interface
Input data:
The expression matrices from an input batch of preprocessed samples
Operating system:
Unix/Linux, Windows
Software type:
Restrictions to use:
Output data:
The fitted models for the batch template and all samples – in formats suitable for visualization and downstream analysis programs. Overlay plots are produced for visual comparison of all class-templates.
Computer skills:


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EMMIX-JCM support


  • Geoffrey McLachlan <>


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CR Rao Advanced Institute of Mathematics, Statistics and Computer Science, Hyderabad, Andhra Pradesh, India; Department of Mathematics, University of Queensland, St. Lucia, Queensland, Australia; Division of Oncology, Stanford Medical School, Stanford, CA, USA; Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford School of Medicine, Stanford, CA, USA; Department of Cancer Biology, Vanderbilt University, Nashville, TN, USA; Broad Institute of MIT and Harvard University, Cambridge, MA, USA; Molecular Mechanisms of Intracellular Transport, Unit Mixte de Recherche 144 Centre National de la Recherche Scientifique/Institut Curie, Paris, France; School of Medicine, Griffith University, Meadowbrook, Queensland, Australia; Department of Neurology, Yale School of Medicine, New Haven, CT, USA

Funding source(s)

The Australian Research Council (ARC), Grant number DP120104327

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