emowse specifications

Information


Unique identifier OMICS_16340
Name emowse
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input file is a list of molecular weights of the peptide fragments.
Output data A listing file containing the following information.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Alan Bleasby <>

emowse in publications

 (4)
PMCID: 3315570
PMID: 22479418
DOI: 10.1371/journal.pone.0033590

[…] 130 2d-page spots (42% success), 43 of which were statistically significant identifications (33% success), but an additional 12 were considered identified by “fingerprint similarity”. the use of emowse scores assigned to protein identifications within the h. contortus database in the yatsuda et al. study may be relatively more difficult to understand by the non-specialist, as scores […]

PMCID: 3080397
PMID: 21533105
DOI: 10.1371/journal.pone.0019008

[…] ratio over 10. outputs resulting from autolysis of trypsin and from commonly occurring keratin contamination were excluded from the subsequent data query., using a customized searching tool based on emowse from emboss (http://emboss.sourceforge.net/), peptide mass fingerprint (pmf) data were matched to wheat polypeptide database constructed from 1,046,811 wheat est sequences using ctrans , using […]

PMCID: 1160161
PMID: 15980569
DOI: 10.1093/nar/gki400

[…] a gel., the web interface provides data input and management of all experimental steps leading up to the ms data. we have implemented a common interface to different search engines like mascot () or emowse () [contained in the emboss package ()]. in this interface, the user can define search sets consisting not only of one specific parameter for a ms search (e.g. peptide mass tolerance of 100 […]


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emowse institution(s)
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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