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eMZed specifications


Unique identifier OMICS_06920
Name eMZed
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for eMZed

eMZed citations


Methanol essential growth of Escherichia coli

Nat Commun
PMCID: 5904121
PMID: 29666370
DOI: 10.1038/s41467-018-03937-y

[…] as 1 μL and the flow rate was 400 nL min−1. Mass acquisition was operated in negative Fourier transform mass spectrometry (FTMS) in full MS scan mode. Obtained LC–MS labeling data were analyzed using eMZed2-based workflows. Average labeling was calculated after targeted peak integration of different isotopes followed by correction for natural labeling using Eq. ():1Labeledfraction=∑i=0nAi×in×∑i=0n […]


Structural basis for substrate specificity of methylsuccinyl CoA dehydrogenase, an unusual member of the acyl CoA dehydrogenase family

PMCID: 5798300
PMID: 29275330
DOI: 10.1074/jbc.RA117.000764

[…] mobile phase system composed of 50 mm ammonium formate, pH 8.1, and methanol as described before (). LC-MS data were analyzed using MassHunter qualitative analysis software (Agilent Technologies) and eMZed (). […]


Biosynthesis of glycerol phosphate is associated with long term potentiation in hippocampal neurons

PMCID: 4958395
PMID: 27499721
DOI: 10.1007/s11306-016-1083-9

[…] Peaks were identified by matching the exact mass with the mass deviation below 3 part per million. Analyses were performed using eMZed2 software (Kiefer et al. ). Metabolites of interest were validated by standard addition with commercially available standards purchased from Sigma–Aldrich. Statistical analysis (i.e. t test and […]


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eMZed institution(s)
ETH Zurich, Institute of Microbiology, Zurich, Switzerland

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