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Protocols

ENA specifications

Information


Unique identifier OMICS_01029
Name ENA
Alternative name European Nucleotide Archive
Restrictions to use None
Community driven No
Data access File download, Browse, Application programming interface
User data submission Allowed
Version 132
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/European_Nucleotide_Archive

Maintainers


  • person_outline Nicole Silvester
  • person_outline Ana Luisa Toribio

Additional information


http://ena-docs.readthedocs.io/en/latest/

Publications for European Nucleotide Archive

ENA citations

 (786)
library_books

Genomic epidemiology of Shigella in the UK shows transmission of pathogen sublineages and determinants of antimicrobial resistance

2018
Sci Rep
PMCID: 5943296
PMID: 29743642
DOI: 10.1038/s41598-018-25764-3

[…] cquired AMR genes were identified using ResFinder on draft genome assemblies (generated by) and QRDR mutations were detected as previously described. All sequence data are publically available at the European Nucleotide Archive under project number PRJEB12097 (individual accessions in Supplementary Data). […]

library_books

Identifying Group Specific Sequences for Microbial Communities Using Long k mer Sequence Signatures

2018
Front Microbiol
PMCID: 5943621
PMID: 29774017
DOI: 10.3389/fmicb.2018.00872

[…] des and testing data are available at https://github. com/VVsmileyx/MetaGO. The metagenomic sequencing datasets of IBD, LC, and T2D of European women were from the European Bioinformatics Institute’s European Nucleotide Archive under accession numbers (EMBL: ERP000108, ERP005860, and ERP002469). […]

library_books

A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land)

2018
Sci Rep
PMCID: 5919928
PMID: 29700429
DOI: 10.1038/s41598-018-25079-3

[…] dataset June 2017 release. Operational taxonomic units (OTUs) table was generated using demultiplexed sequences at 97% similarity and singletons were removed. All sequences have been submitted to the European Nucleotide Archive (EMBL - EBI) under accession number PRJEB23181. […]

call_split

Multiplexed Quantitation of Intraphagocyte Mycobacterium tuberculosis Secreted Protein Effectors

2018
Cell Rep
PMCID: 5946722
PMID: 29694886
DOI: 10.1016/j.celrep.2018.03.125
call_split See protocol

[…] (). Regions corresponding to the highly repeated regions PE-PPE-PGRS were filtered out to ensure confidence in SNP calling. The accession number for the sequencing data reported in this paper is ENA (European Nucleotide Archive): PRJEB23484. […]

library_books

Genome Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate Oxidising Bacteria

2018
Genes
PMCID: 5924567
PMID: 29690652
DOI: 10.3390/genes9040225

[…] 3,093,245 bp) of that sequenced by the Ion Torrent PM system []. The genome project is deposited in the Genomes On Line Database [] with GOLD id Gp0161004, and the genome sequence is deposited in the European Nucleotide Archive database with accession number ERS1433212. Genome statistics are summarized in . Due to the bioinformatics approach that is applied, we do not expect any contamination of t […]

library_books

Inter genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

2018
BMC Genomics
PMCID: 5907747
PMID: 29673315
DOI: 10.1186/s12864-018-4612-2

[…] 8 vs. 1372 bp, with 2.78 vs. 2.76 exons per gene (average exon and intron length 500, 497 and 71, 74 bp, respectively). The F. venenatum genome sequence and annotation (FV1) has been deposited in the European Nucleotide Archive under accession PRJEB7533 (Table ).Previous phylogenetic analyses based on the RNA polymerases, RPB1 and RPB2, concluded that F. venenatum was situated within the trichothe […]

Citations

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ENA institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK
ENA funding source(s)
Supported by European Molecular Biology Laboratory; Horizon 2020 Programme of the European Union under COMPARE [643476]; EMBRIC [654008]; ELIXIREXCELERATE [676559]; UK Biotechnology and Biological Sciences Research Council under Metagenomics Portal II [BB/M011755/1]; Metagenomics Portal III [BB/R015228/1], MG-RAST-EBI [BB/N018354/1]; RNA Central [BB/N019199/1]; Gordon and Betty Moore Foundation (UniEuk).

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