ESAT specifications

Information


Unique identifier OMICS_12599
Name ESAT
Alternative name End Sequence Analysis ToolKit
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input data ESAT takes a set of alignment files (SAM or BAM) with genome alignment coordinates, a file containing transcript coordinates (BED or text file), and various command-line parameters that specify the details of how analysis should be performed.
Output data Read counts for each transcript provided.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Manuel Garber <>

ESAT article

ESAT institution(s)
Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Medical School, Worcester, MA, USA; Department of System Biology, Harvard Medical School, Boston, MA, USA; Institute of Biotechnology, Vilnius University, Vilnius, Lithuania; Computer Technologies Department, ITMO University, Saint Petersburg, Russia; Pathology & Immunology Department, Washington University, St. Louis, MO, USA; Department of Medicine, Diabetes Center of Excellence, University of Massachusetts Medical School, Worcester, MA, USA; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA; Biological Chemistry Department, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
ESAT funding source(s)
NIH (grant DK105837); NHGRI (grant U01 HG007910); NIDA (grant DP1DA034990); HIRN (grant UC4DK104218)

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