ESAT specifications

Unique identifier:
OMICS_12599
Software type:
Toolkit/Suite
Restrictions to use:
None
Output data:
Read counts for each transcript provided.
Programming languages:
Java
Stability:
Stable
Name:
End Sequence Analysis ToolKit
Interface:
Command line interface
Input data:
ESAT takes a set of alignment files (SAM or BAM) with genome alignment coordinates, a file containing transcript coordinates (BED or text file), and various command-line parameters that specify the details of how analysis should be performed.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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ESAT support

Documentation

Maintainer

  • Manuel Garber <>

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Publications

Institution(s)

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Medical School, Worcester, MA, USA; Department of System Biology, Harvard Medical School, Boston, MA, USA; Institute of Biotechnology, Vilnius University, Vilnius, Lithuania; Computer Technologies Department, ITMO University, Saint Petersburg, Russia; Pathology & Immunology Department, Washington University, St. Louis, MO, USA; Department of Medicine, Diabetes Center of Excellence, University of Massachusetts Medical School, Worcester, MA, USA; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA; Biological Chemistry Department, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel

Funding source(s)

NIH (grant DK105837); NHGRI (grant U01 HG007910); NIDA (grant DP1DA034990); HIRN (grant UC4DK104218)

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