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Endrov specifications


Unique identifier OMICS_22433
Name Endrov
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 3-clause “New” or “Revised” License
Computer skills Medium
Version 2.23.3
Maintained No




No version available



This tool is not available anymore.

Additional information

http://www.endrov.net/wiki/index.php?title=About http://www.endrov.net/wiki/index.php?title=Users_Guide http://www.endrov.net/wiki/index.php?title=Installing_EV

Publication for Endrov

Endrov citations


Autophagy and modular restructuring of metabolism control germline tumor differentiation and proliferation in C. elegans

PMCID: 4835962
PMID: 26759963
DOI: 10.1080/15548627.2015.1136771
call_split See protocol

[…] otic Moticam 1SP camera (Motic Deutschland GmbH, Wetzlar, Germany) with Motic acquisition software.3D reconstructions were performed using imod (http://bio3d.colorado.edu/imod/) for cell outlines and Endrov (http://www.endrov.net/) for autophagosome movement. […]


The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio Temporal Expression Dynamics during Embryogenesis

PLoS One
PMCID: 4448998
PMID: 26024448
DOI: 10.1371/journal.pone.0126947

[…] GFP signal intensity of the recordings to reduce overexposure when the GFP signal became strong at later times (see , []). To manage this intricate recording scheme we developed the imaging framework Endrov []. The 4D stacks of DIC and GFP images can be viewed and played back in Endrov as original 4D image data. Further, we made summary movies for simple viewing. We have recorded 440 embryos in to […]


IQM: An Extensible and Portable Open Source Application for Image and Signal Analysis in Java

PLoS One
PMCID: 4303421
PMID: 25612319
DOI: 10.1371/journal.pone.0116329

[…] he main goals of this project are reproducibility, standardization, and easy management of plugins and workflows. It supports graphical programming and script development in Javascript and Python []. Endrov, www.endrov.net:The image analysis program Endrov (current version: 2.23.2, Java) can be used for image acquisition from light and fluorescence microscopes as well as for post-processing. Main […]


Estimation of total glomerular number using an integrated disector method in embryonic and postnatal kidneys

PMCID: 4349599
PMID: 25780607
DOI: 10.1186/2054-3581-1-12

[…] Several open source biomedical image analysis software packages have recently become available including Endrov [], Icy [], BioImagXD [] and Fiji []. Each package has a specialized focus and toolset to facilitate processing of complex biological spatio-temporal image data obtained mainly by microscopy. C […]


par 1, Atypical pkc, and PP2A/B55 sur 6 Are Implicated in the Regulation of Exocyst Mediated Membrane Trafficking in Caenorhabditis elegans

PMCID: 3887533
PMID: 24192838
DOI: 10.1534/g3.113.006718
call_split See protocol

[…] -cell stage embryo to the 28-cell stage embryo, the recordings always contain at least one embryo that is before the 4-cell stage. The recordings were subsequently viewed and analyzed with the use of Endrov (, www.endrov.net). […]


Innovation in biological microscopy: Current status and future directions

PMCID: 3427900
PMID: 22408015
DOI: 10.1002/bies.201100168

[…] ojects cover a wide range of functionality, are heavily used by the scientific community and as they are open, there are a number of examples of linkages between these projects. ImageJ, CellProfiler, Endrov and KNIME use Bio-Formats to open image files, and ImageJ, Cellprofiler and Endrov can all open files stored in OMERO. The value of these linkages is just beginning to be realised. For example, […]


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Endrov institution(s)
Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden; Center for Biosciences, Karolinska Institutet, Huddinge, Sweden; School of Life Sciences, Södertörn University, Huddinge, Sweden; Master’s Programme in Technology and Learning, KTH Royal Institute of Technology, Stockholm, Sweden
Endrov funding source(s)
Supported by the Swedish Research Council, Stiftelsen för Strategisk Forskning and the Center for Biosciences at Karolinska Institutet.

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