Endrov specifications

Information


Unique identifier OMICS_22433
Name Endrov
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 3-clause “New” or “Revised” License
Computer skills Medium
Version 2.23.3
Maintained Yes

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Documentation


Maintainer


  • person_outline Johan Henriksson <>

Additional information


http://www.endrov.net/wiki/index.php?title=About http://www.endrov.net/wiki/index.php?title=Users_Guide http://www.endrov.net/wiki/index.php?title=Installing_EV

Publication for Endrov

Endrov in publications

 (5)
PMCID: 4835962
PMID: 26759963
DOI: 10.1080/15548627.2015.1136771

[…] moticam 1sp camera (motic deutschland gmbh, wetzlar, germany) with motic acquisition software., 3d reconstructions were performed using imod (http://bio3d.colorado.edu/imod/) for cell outlines and endrov (http://www.endrov.net/) for autophagosome movement., to quantify the area occupied by unc-119 expressing cells per gonad arm, a qualitative scoring was performed blindly from maximum […]

PMCID: 4448998
PMID: 26024448
DOI: 10.1371/journal.pone.0126947

[…] hochob. to understand how transcription factors regulate cell fate during development, precise spatio-temporal expression data need to be obtained. using a new imaging framework that we developed, endrov, we have generated spatio-temporal expression profiles during embryogenesis of over 60 homeobox genes, as well as a number of other developmental control genes using gfp reporters. we used […]

PMCID: 4349599
PMID: 25780607
DOI: 10.1186/2054-3581-1-12

[…] us to implement cost-effective in house stereological methods for glomerular quantitation., several open source biomedical image analysis software packages have recently become available including endrov [], icy [], bioimagxd [] and fiji []. each package has a specialized focus and toolset to facilitate processing of complex biological spatio-temporal image data obtained mainly by microscopy. […]

PMCID: 3887533
PMID: 24192838
DOI: 10.1534/g3.113.006718

[…] stage embryo to the 28-cell stage embryo, the recordings always contain at least one embryo that is before the 4-cell stage. the recordings were subsequently viewed and analyzed with the use of endrov (, www.endrov.net)., animals subjected to rnai were collected and washed 3 times with m9. after removing the supernatant, worm pellets were stored at −80° until rna isolation. the total rna […]

PMCID: 2665216
PMID: 19181702
DOI: 10.1093/nar/gkp018

[…] the mounting medium (m9) and the fluorescent staining was detected using a dapi filter on a zeiss axioplan 2 imaging microscope. after staining, the gonadal structure was analyzed with the software endrov (ver.2.11.0) by 3d reconstruction of microscopic images and by annotation of stained nuclei., the stage in which embryos arrested was determined by inspection of embryonic corpses. in order […]


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Endrov institution(s)
Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden; Center for Biosciences, Karolinska Institutet, Huddinge, Sweden; School of Life Sciences, Södertörn University, Huddinge, Sweden; Master’s Programme in Technology and Learning, KTH Royal Institute of Technology, Stockholm, Sweden
Endrov funding source(s)
Supported by the Swedish Research Council, Stiftelsen för Strategisk Forskning and the Center for Biosciences at Karolinska Institutet.

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