Enlight statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Enlight
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Protocols

Enlight specifications

Information


Unique identifier OMICS_08578
Name Enlight
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for Enlight

Enlight citations

 (3)
call_split

Genotypic variability based association identifies novel non additive loci DHCR7 and IRF4 in sero negative rheumatoid arthritis

2017
Sci Rep
PMCID: 5509675
PMID: 28706201
DOI: 10.1038/s41598-017-05447-1
call_split See protocol

[…] ANNOVAR was used to annotate the identified vGWAS SNPs and to calculate their conservation scores. Enlight was used to generate plots of vGWAS regions (50 kilobases flanking the lead SNP) of interest. […]

library_books

Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non coding regions of the human genome

2015
PMCID: 4696349
PMID: 26719772
DOI: 10.1186/s13072-015-0050-4

[…] derived from the ENCODE and REMC databases). However, neither program has options for analyzing only the relevant cell types for the disease-associated SNPs. In contrast, FunciSNP [], GREGOR [], and Enlight [] allow users to add their specific epigenetic data from the cell type of interest (which may not be in the public databases), providing a better prioritization of the regulatory SNPs. Of not […]

library_books

Functional Annotation of Putative Regulatory Elements at Cancer Susceptibility Loci

2014
Cancer Inform
PMCID: 4179605
PMID: 25288875
DOI: 10.4137/CIN.S13789

[…] s), generates a list of correlated variants with the input variants, and then annotates all listed variants with pre-loaded ENCODE, Roadmap, or expression data. Recently, a bioinformatics tool called Enlight (http://enlight.usc.edu/) was developed to help identify causal variants by taking regional plots from GWAS results and overlaying biofeatures such as epigenetic modification, DHS, and TFBS. O […]


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Enlight institution(s)
Zilkha Neurogenetic Institute, University of Southern California, Los Angeles, CA, USA; Department of Preventive Medicine, USC Keck School of Medicine, Los Angeles, CA, USA; Department of Psychiatry & Behavioral Sciences, USC Keck School of Medicine, Los Angeles, CA, USA
Enlight funding source(s)
National Institute of Health [R01 HG006465]

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