ENmix statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ENmix
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Tool usage distribution map

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Associated diseases

This word cloud represents ENmix usage per disease context
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Popular tool citations

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ENmix specifications

Information


Unique identifier OMICS_09981
Name ENmix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
stats, parallel, graphics, BiocGenerics, grDevices, RUnit, preprocessCore, MASS, foreach, SummarizedExperiment(>=1.1.6), geneplotter, doParallel, sva, minfi(>=1.22.0), RPMM, impute, wateRmelon, minfiData(>=0.4.1)
Maintained Yes

Subtool


  • oxBS-MLE

Versioning


No version available

Documentation


Maintainer


  • person_outline Zongli Xu

Publications for ENmix

ENmix citations

 (2)
library_books

Impact on birth weight of maternal smoking throughout pregnancy mediated by DNA methylation

2018
BMC Genomics
PMCID: 5922319
PMID: 29695247
DOI: 10.1186/s12864-018-4652-7

[…] Quality control (QC) and all statistical analyses were performed using the R version 3.2.5 statistical analysis software [], and the R-packages minfi [], wateRmelon [], Enmix [], sva [], limma [], and mediation []. […]

library_books

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip

2018
BMC Bioinformatics
PMCID: 5907140
PMID: 29671397
DOI: 10.1186/s12859-018-2096-3

[…] e Infinium I/II bias. R package missMethyl is suitable for GO term enrichment analysis and biological interpretation. In our view, minfi is a proper R package to import data, eliminate background and ENmix package can be used to correct the type bias, then the normalized data should be used in the remaining steps of the framework. […]


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ENmix institution(s)
Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA; Biostatistics & Computational Biology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA; Department of Environmental Health, College of Medicine, University of Cincinnati, Cincinnati, OH, USA; Laboratory of Molecular Carcinogenesis, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA
ENmix funding source(s)
Intramural Research Program of the NIH, National Institute of Environmental Health Sciences [Z01 ES044005, Z01 ES101765, Z01 ES049033, Z01 ES049032]

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