Enrich specifications

Information


Unique identifier OMICS_08948
Name Enrich
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format FASTQ
Operating system Unix/Linux
Programming languages Python
License BSD 2-clause “Simplified” License, GNU General Public License version 3.0
Computer skills Medium
Version 1.2.0
Stability Stable
Requirements
NumPy, SciPy, pandas, PyTables, Statsmodels, Matplotlib
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Douglas M. Fowler <>
  • person_outline Alan Rubin <>

Additional information


Previous version: http://depts.washington.edu/sfields/software/enrich/ http://depts.washington.edu/sfields/software/enrich/docs/0.2/enrich.html

Publication for Enrich

Enrich in publications

 (2)
PMCID: 5499817
PMID: 28335006
DOI: 10.1093/nar/gkx183

[…] and jjs_read_2., paired sequencing reads were de-multiplexed with bcl2fastq and joined using the fastq-join tool within the ea-utils package (http://expressionanalysis.github.io/ea-utils/). enrich2 was used to count barcodes that contained no ns and that had minimum phred-scaled quality score of at least 20 at each base (http://github.com/fowlerlab/enrich2). the enrich2 configuration […]

PMCID: 3538566
PMID: 23173769
DOI: 10.1186/1751-0147-54-68

[…] with different coloured collars. the goats were observed the two last days before they got access to the outside enclosure (in), both days in out1, the two first (enrich1) and the two last days (enrich2) of the period with access to the enclosure and with enrichment and both days in out2 (ten days in total, see figure ). on all the observation days it was cloudy or partly cloudy […]


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Enrich institution(s)
Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia; Department of Medical Biology, University of Melbourne, Melbourne, VIC, Australia; Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia; Department of Genome Sciences, University of Washington, Seattle, WA, USA; Institute for Protein Design, University of Washington, Seattle, WA, USA; Department of Pathology, University of Washington, Seattle, WA, USA; Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, VIC, Australia; Department of Mathematics and Statistics, University of Melbourne, Melbourne, VIC, Australia; Department of Bioengineering, University of Washington, Seattle, WA, USA
Enrich funding source(s)
Supported by the National Institute of General Medical Sciences (1R01GM109110 and 5R24GM115277 and P41GM103533); the National Institute of Biomedical Imaging and Bioengineering (5R21EB020277); the Washington Research Foundation (Washington Research Foundation Innovation Postdoctoral Fellowship) and the National Health and Medical Research Council of Australia (Program Grant 1054618).

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