EnrichedHeatmap statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases
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EnrichedHeatmap specifications

Information


Unique identifier OMICS_28594
Name EnrichedHeatmap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License GNU General Public License version 2.0, MIT License
Computer skills Advanced
Version 1.9.4
Stability Stable
Requirements
methods, grid, ComplexHeatmap, GenomicRanges
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Zuguang Gu <>

Publication for EnrichedHeatmap

EnrichedHeatmap citation

library_books

A critical assessment of topologically associating domain prediction tools

2017
PMCID: 5389712
PMID: 28334773
DOI: 10.1093/nar/gkx145

[…] traceable square along the diagonal. bed files with tad ranges were manually created and used for tool comparison., ctcf distribution around predicted tool boundaries was calculated in r using the ‘enrichedheatmap’ bioconductor package (). data were binned at 10 kb., data analysis was mainly carried out in r and plots were generated using ggplot2 (). tools were tested on the high performance […]


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EnrichedHeatmap institution(s)
Division of Theoretical Bioinformatics (B080), German Cancer Research Center (DKFZ), Heidelberg, Germany; Heidelberg Center for Personalized Oncology (DKFZ-HIPO), German Cancer Research Center (DKFZ), Heidelberg, Germany; Department for Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant Center, Heidelberg University, Heidelberg, Germany
EnrichedHeatmap funding source(s)
Supported by the German Cancer Research Center-Heidelberg Center for Personalized Oncology (DKFZ-HIPO) and the BMBF-funded de.NBI HD-HuB network (#031A537A, #031A537C).

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