Enrichment Map specifications

Information


Unique identifier OMICS_04137
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements Cytoscape
Maintained Yes

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Documentation


Enrichment Map article

Enrichment Map citations

 (3)
2018
PMCID: 5873934

[…] plant attribute from to, po, gro and eo were also determined. to visualize stress related go-term associated genes, scatter plots for multidimensional scaling of semantic similarities and gene enrichment map for functional network of the genes were generated using default values in revigo [42] and cytoscape v3.3.0 [43] respectively., sorghum protein sequences that represent 710 full length […]

2017
PMCID: 5772172

[…] respective cell type compared to the overall mean was mapped onto the network and displayed in colors ranging from blue (negative fold-change) over white to red (positive fold-change) using the app enrichment map v2.0.1 in cytoscape v3.2.0. based on the fold-change patterns, the networks were divided into four main clusters, where each cluster represents one of the four cell types, […]

2016
PMCID: 5389688

[…] expression analysis was performed using deseq2 (24). differentially expressed genes from each comparison were tested for functionally enriched pathways and gene ontology terms using goseq (25) and enrichment map (26)., for qpcr rna was extracted using trizol (invitrogen) according to manufacturer's instruction, and quantified using nanodrop cdna synthesis using the oligo dt primers and data […]

Enrichment Map institution(s)
Department of Molecular Genetics, Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada

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