EPACTS pipeline

EPACTS specifications


Unique identifier OMICS_07453
Alternative name Efficient and Parallelizable Association Container Toolbox
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 3.2.6
Stability Stable
Maintained Yes


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EPACTS citations

PMCID: 5034897

[…] haplotype panel. to identify population outliers, we carried out principal components analysis (pca). we computed pcs for each of the three variant types (snvs, short indels, large deletions) using epacts on an ld-pruned (r2<0.20) set of autosomal variants obtained by removing large high-ld regions59,60, variants with maf<0.01, and variants with hardy-weinberg equilibrium p<10−6. […]

PMCID: 4627580

[…] paragraph). regression coefficients for β039 – the most common in sardinia with 10.3 % of carriers – are reported in the supplementary table 2., association was performed using the q.emmax test in epacts61, which implements a linear mixed model procedure to correct for cryptic relatedness and population stratification by incorporating a genomic-based kinship matrix. associations reported […]

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