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EPDnew screenshot

A recently introduced new part of the Eukaryotic Promoter Database (EPD) which has been described in more detail in a previous NAR Database Issue. EPD is an old database of experimentally characterized eukaryotic POL II promoters, which are conceptually defined as transcription initiation sites or regions. EPDnew is a collection of automatically compiled, organism-specific promoter lists complementing the old corpus of manually compiled promoter entries of EPD. This part is exclusively derived from next generation sequencing data from high-throughput promoter mapping experiments.

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Institution(s)

Swiss Institute of Bioinformatics (SIB), CH-1015 Lausanne, Switzerland

  • (Dreos et al., 2015) The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools. Nucleic acids research.
    PMID: 25378343
  • (Dreos et al., 2013) EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. Nucleic acids research.
    PMID: 23193273
  • Animals
    • Danio rerio
    • Drosophila melanogaster
    • Homo sapiens
    • Mus musculus
  • Fungi
  • Plants
  • Protists

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