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epicode specifications


Unique identifier OMICS_13493
Name epicode
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Reference genomic regions
Input format BED
Output format BAM
Operating system Unix/Linux
Programming languages Python, R
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Marcin Cieslik <>

Publication for epicode

epicode in publication

PMCID: 5838075
PMID: 29531679
DOI: 10.1002/ece3.3868

[…] were carried out using the r environment. the msap profiles were analyzed with the r script msap_calc (schulz, eckstein, & durka, ) using the function extract_msap_epigenotypes with parameters epicode = “mix1,” delete.monomorphic.loci = true, and minpoly = 2. under the scoring scheme “mix1,” m‐msap makers were obtained with a methylation scoring approach scoring the presence […]

epicode institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia Health System, Charlottesville, VI, USA
epicode funding source(s)
This work was supported by the University of Virginia.

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