epicode statistics

info info

Citations per year


Popular tool citations

chevron_left Motif scanning Histone modification prediction chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

epicode specifications


Unique identifier OMICS_13493
Name epicode
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Reference genomic regions
Input format BED
Output format BAM
Operating system Unix/Linux
Programming languages Python, R
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes


No version available



  • person_outline Marcin Cieslik <>

Publication for epicode

epicode citation


Genetic and epigenetic variations associated with adaptation to heterogeneous habitat conditions in a deciduous shrub

PMCID: 5838075
PMID: 29531679
DOI: 10.1002/ece3.3868

[…] were carried out using the r environment. the msap profiles were analyzed with the r script msap_calc (schulz, eckstein, & durka, ) using the function extract_msap_epigenotypes with parameters epicode = “mix1,” delete.monomorphic.loci = true, and minpoly = 2. under the scoring scheme “mix1,” m‐msap makers were obtained with a methylation scoring approach scoring the presence […]

Want to access the full list of citations?
epicode institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia Health System, Charlottesville, VI, USA
epicode funding source(s)
This work was supported by the University of Virginia.

epicode reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review epicode