epiGBS specifications

Information


Unique identifier OMICS_13278
Name epiGBS
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements PEAR, usearch, seqtk, pysam, bioPython, bcftools, samtools, vcfutils.pl, pyfaidx, rename_fast.py, pigz, bwa-mem
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Thomas P. van Gurp <>

Publication for epiGBS

epiGBS institution(s)
Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands; Department of Experimental Plant Ecology, Radboud University, Nijmegen, Netherlands; Plant Ecology and Nature Conservation Group, Wageningen University, Wageningen, Netherlands
epiGBS funding source(s)
This study was funded by the Netherlands Organization for Scientific Research (NWO-ALW grants 864.10.008 and 820.01.025).

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