Epigenomic analysis software tools and databases

Epigenomics applications

For didactic purposes, epigenetic modifications can be grouped into three main categories: DNA methylation, histone modifications and nucleosome positioning (Portela and Esteller, 2010). An altered pattern of epigenetic modifications is central to many common human diseases,…

Epigenomic analysis software tools and databases

Most Recent Tools

SUPERmerge
Desktop

SUPERmerge

Allows the analysis and annotation of coverage islands within individual read…

Allows the analysis and annotation of coverage islands within individual read alignment (BAM) files of histone modification ChIPseq datasets harboring broad chromatin domains. SUPERmerge allows…

MeDeCom
Desktop

MeDeCom

Allows the decomposition of complex DNA methylomes into latent methylation…

Allows the decomposition of complex DNA methylomes into latent methylation components and their proportions in each sample. MeDeCom is an unsupervised tool for the exploratory study of the major…

VizHub
Web

VizHub

Displays sequencing data from Roadmap Epigenomics project, powered by a local…

Displays sequencing data from Roadmap Epigenomics project, powered by a local mirror of UCSC Genome Browser. VizHub is a visualization tool. The Roadmap Epigenomics Mapping Consortium was launched…

DeepBlue
Web
Desktop

DeepBlue

Provides a central data access hub for large collections of epigenomic data.…

Provides a central data access hub for large collections of epigenomic data. DeepBlue is a server which contains a set of commands designed to perform operations on the epigenomic data, for example,…

Most Popular Tools

iDNA-Methyl
Web

iDNA-Methyl

Identifies DNA methylation sites via pseudo trinucleotide composition. We…

Identifies DNA methylation sites via pseudo trinucleotide composition. We anticipate that the iDNA-Methyl predictor will become a useful high-throughput tool because (i) information of DNA…

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