Epigenomic analysis software tools and databases

For didactic purposes, epigenetic modifications can be grouped into three main categories: DNA methylation, histone modifications and nucleosome positioning (Portela and Esteller, 2010). An altered pattern of epigenetic modifications is central to…

Epigenomics applications

Most recent bioinformatics tools

H(O)TA
Desktop

H(O)TA Hairpin (Oxidative) bisulfite sequencing Time course Analyzer

Infers (hydroxy-)methylation levels and efficiencies of the involved enzymes at…

Infers (hydroxy-)methylation levels and efficiencies of the involved enzymes at a certain DNA locus. H(O)TA is based on the construction of two coupled Hidden Markov Models (HMMs). It is able to take…

iDNA4mC
Web

iDNA4mC

Provides a method for identification of DNA N4-methylcytosine (4mC) sites.…

Provides a method for identification of DNA N4-methylcytosine (4mC) sites. iDNA4mC is based on a support vector machine (SVM) in which the DNA samples are formulated by using the nucleotide chemical…

EMMCKmer
Desktop

EMMCKmer Epigenetic Metagenomic Motif Characterization by Kmer analysis

Detects epigenetic motifs without the need for high-coverage, clonal samples or…

Detects epigenetic motifs without the need for high-coverage, clonal samples or complete references. EMMCKmer provides a complete framework for using epigenetic profiles as an alternative metric for…

Roadmap…
Dataset

Roadmap Epigenomics Project

Provides a public resource of human epigenomic data to catalyze basic biology…

Provides a public resource of human epigenomic data to catalyze basic biology and disease-oriented research. Roadmap Epigenomics Project is produced by The NIH Roadmap Epigenomics Mapping Consortium.…

Most popular analytical software and databases

iDNA-Methyl
Web

iDNA-Methyl

Identifies DNA methylation sites via pseudo trinucleotide composition. We…

Identifies DNA methylation sites via pseudo trinucleotide composition. We anticipate that the iDNA-Methyl predictor will become a useful high-throughput tool because (i) information of DNA…

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