Epigenomic analysis software tools and databases

Epigenomics applications

For didactic purposes, epigenetic modifications can be grouped into three main categories: DNA methylation, histone modifications and nucleosome positioning (Portela and Esteller, 2010). An altered pattern of epigenetic modifications is central to many common human diseases,…

Epigenomic analysis software tools and databases

Most Recent Tools

Desktop app
Epigram Epigram

Epigram

Predicts histone modification and DNA methylation patterns from DNA motifs.…

Predicts histone modification and DNA methylation patterns from DNA motifs. Epigram is an analysis pipeline used to systematically identify DNA motifs that are predictive of epigenomic modifications.…

Desktop app
Armatus Armatus

Armatus

Capturing persistent domains across various resolutions by adjusting a single…

Capturing persistent domains across various resolutions by adjusting a single scale parameter. Armatus produces domains that display much higher interaction frequencies within the domains than…

MethmiRbase MethmiRbase

MethmiRbase

A database that makes use of meta-analysis to identify potential…

A database that makes use of meta-analysis to identify potential epigenetic-regulated miRNAs for three human cancers, i.e. lung adenocarcinoma, lung squamous carcinoma and ovarian cancers.…

Desktop app
High-dimensional… High-dimensional Mediation Analysis

HIMA High-dimensional Mediation Analysis

An R package for estimating and testing high-dimensional mediation effects in…

An R package for estimating and testing high-dimensional mediation effects in genomic/epigenomic studies. HIMA adopts the multiple mediator model’s framework and extend it to the highdimensional…

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