Epigenomic analysis software tools and databases

Epigenomics applications

For didactic purposes, epigenetic modifications can be grouped into three main categories: DNA methylation, histone modifications and nucleosome positioning (Portela and Esteller, 2010). An altered pattern of epigenetic modifications is central to many common human diseases,…

Epigenomic analysis software tools and databases

Most Recent Tools

DeepChrome
Desktop
Web

DeepChrome

Handles all the bins together, capturing both neighboring range and long range…

Handles all the bins together, capturing both neighboring range and long range interactions among input features, as well as automatically extract important features. DeepChrome is a unified…

HDMFinder
Desktop

HDMFinder

Implements a computational pattern recognition method that is used to predict…

Implements a computational pattern recognition method that is used to predict the methylation landscape of human brain DNA. HDMFinder method can be applied both to CpG islands and to non-CpG island…

CETS
Desktop

CETS Cell EpigenoType Specific

Is designed for the quantification and normalization of differing neuronal…

Is designed for the quantification and normalization of differing neuronal proportions in genome-scale DNA methylation datasets. The application of CETS quantification and transformation can reduce…

BPRMeth
Desktop

BPRMeth

Models methylation profiles and extracts higher order features. BPRMeth uses…

Models methylation profiles and extracts higher order features. BPRMeth uses the Binomial Probit Regression likelihood. The features quantitate precisely notions of shape of a methylation profile.…

Most Popular Tools

iDNA-Methyl
Web

iDNA-Methyl

Identifies DNA methylation sites via pseudo trinucleotide composition. We…

Identifies DNA methylation sites via pseudo trinucleotide composition. We anticipate that the iDNA-Methyl predictor will become a useful high-throughput tool because (i) information of DNA…

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