Epigram specifications

Information


Unique identifier OMICS_14546
Name Epigram
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Wei Wang

Publications for Epigram

Epigram citation

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Deciphering H3K4me3 broad domains associated with gene regulatory networks and conserved epigenomic landscapes in the human brain

2015
PMCID: 5068762
PMID: 26575220
DOI: 10.1038/tp.2015.169

[…] ng enrichment and comparative matching of de novo sequences, five databases were combined, Transfac, Jaspar, Uniprobe, hPDI and Taipale. De novo motifs were compared against a total of 3764 motifs by EPIGRAM using k-mer features with lasso regularization to characterize motifs associated with H3K4me3 in NeuN+ nuclei. TOMTOM (version 4.9.1) tool from the MEME suite was used to identify nearest matc […]

Epigram institution(s)
Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA
Epigram funding source(s)
This work was partially supported by NIH (U01 ES017166).

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