epiMINE specifications


Unique identifier OMICS_13854
Name epiMINE
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data A file with set of target regions, a tab separated file with all chromosomes and its length
Input format BED, BAM
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Version 2.25
Stability Stable
Requirements Rpy2, PySam, pybedtools, wxPython, gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret, ROCR, bedtools
Maintained Yes



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epiMINE article

epiMINE institution(s)
Department of Experimental Oncology, European Institute of Oncology, Milan, Italy
epiMINE funding source(s)
The work in the Pasini laboratory was supported by grants from the Italian Association for Cancer Research (AIRC), the Italian Ministry of Health, the Umberto Veronesi Foundation (FUV) and by fellowships from the Italian Foundation for Cancer Research (FIRC).

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