epiMINE statistics

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Citations per year

Popular tool citations

Known transcript quantification

Tool usage distribution map

Associated diseases

epiMINE specifications

Desktop Forum (0)

Information

Unique identifier	OMICS_13854
Name	epiMINE
Software type	Application/Script
Interface	Command line interface, Graphical user interface
Restrictions to use	None
Input data	A file with set of target regions, a tab separated file with all chromosomes and its length
Input format	BED, BAM
Operating system	Unix/Linux, Mac OS
Programming languages	Python
Computer skills	Advanced
Version	2.25
Stability	Stable
Requirements	Rpy2, PySam, pybedtools, wxPython, gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret, ROCR, bedtools
Maintained	Yes

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Publication for epiMINE

EpiMINE, a computational program for mining epigenomic data.

2016 Epigenetics Chromatin

PMCID: 5043526

PMID: 27708717

DOI: 10.1186/s13072-016-0095-z

epiMINE in publication

In vitro comparison of flexural strength and elastic modulus of three provisional crown materials used in fixed prosthodontics

PMCID: 3892269

PMID: 24455084

DOI: 10.4317/jced.51136

[…] resistance of the other materials was as follows: the poly (methyl methacrylate) materials, caulk™ temporary bridge resin and g-c unifast™ temporary resin; the composite material, protemp™; and the epimine material, scutan™ ()., similar results were obtained by scherrer et al () and haselton et al (). however koumjian et al, () concluded that even though no data were available to compare […]

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epiMINE institution(s)

Department of Experimental Oncology, European Institute of Oncology, Milan, Italy

epiMINE funding source(s)

The work in the Pasini laboratory was supported by grants from the Italian Association for Cancer Research (AIRC), the Italian Ministry of Health, the Umberto Veronesi Foundation (FUV) and by fellowships from the Italian Foundation for Cancer Research (FIRC).

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