epiMINE specifications
Information
| Unique identifier | OMICS_13854 |
|---|---|
| Name | epiMINE |
| Software type | Application/Script |
| Interface | Command line interface, Graphical user interface |
| Restrictions to use | None |
| Input data | A file with set of target regions, a tab separated file with all chromosomes and its length |
| Input format | BED, BAM |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | Python |
| Computer skills | Advanced |
| Version | 2.25 |
| Stability | Stable |
| Requirements |
Rpy2, PySam, pybedtools, wxPython, gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret, ROCR, bedtools
|
| Maintained | Yes |
Versioning
No version available
Publication for epiMINE
2016 Epigenetics Chromatin
PMCID: 5043526
PMID: 27708717
DOI: 10.1186/s13072-016-0095-z
epiMINE institution(s)
Department of Experimental Oncology, European Institute of Oncology, Milan, Italy
epiMINE funding source(s)
The work in the Pasini laboratory was supported by grants from the Italian Association for Cancer Research (AIRC), the Italian Ministry of Health, the Umberto Veronesi Foundation (FUV) and by fellowships from the Italian Foundation for Cancer Research (FIRC).
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